RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 EME1Q96AY2 570 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 ASCL2Q99929 193 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 ZMAT5Q9UDW3 170 aaKnown RBP13.08□□□□□ -0.32
CLN3-264ENST00000637985 SLC22A13Q9Y226 551 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 H0YHG0 523 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 SLC1A7O00341 560 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 MPZP25189 248 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 PRDX2P32119 198 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 CAPZA1P52907 286 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 MRPL41Q8IXM3 137 aaKnown RBP13.07□□□□□ -0.32
CLN3-264ENST00000637985 Q8NFD4 153 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 PYDC1Q8WXC3 89 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 NRIP2Q9BQI9 281 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 ADI1Q9BV57 179 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 PKIBQ9C010 78 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 PLEKHA1Q9HB21 404 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 HES4Q9HCC6 221 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 SLC7A11Q9UPY5 501 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 ORC6Q9Y5N6 252 aa13.07□□□□□ -0.32
CLN3-264ENST00000637985 A0A1W2PPH5 198 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 A6NIN4 97 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 SYT7O43581 403 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 NXPH2O95156 264 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 ALPLP05186 524 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 ISL1P61371 349 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 IL24Q13007 206 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 ZFP1Q6P2D0 407 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 DYNAPQ8N1N2 210 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 CD177Q8N6Q3 437 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 C10orf35Q96D05 121 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 HRASLS5Q96KN8 279 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 ZNF488Q96MN9 340 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 MCRIP2Q9BUT9 160 aaKnown RBP13.06□□□□□ -0.32
CLN3-264ENST00000637985 ELL3Q9HB65 397 aaPredicted RBP13.06□□□□□ -0.32
CLN3-264ENST00000637985 IMPAD1Q9NX62 359 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 USE1Q9NZ43 259 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 PITPNC1Q9UKF7 332 aa13.06□□□□□ -0.32
CLN3-264ENST00000637985 FAM90A8PA6NJQ4 464 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 GATBO75879 557 aaKnown RBP13.05□□□□□ -0.32
CLN3-264ENST00000637985 APOL3O95236 402 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 SERPINA3P01011 423 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 ERVK11-1P61568 191 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 RPL31P62899 125 aaKnown RBP13.05□□□□□ -0.32
CLN3-264ENST00000637985 ZNF85Q03923 595 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 ODF4Q2M2E3 257 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 SLC25A30Q5SVS4 291 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 UNQ9370/PRO34162Q6UXP9 181 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 ETV3LQ6ZN32 361 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 FAM220AQ7Z4H9 259 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 CENPVQ7Z7K6 275 aaPredicted RBP13.05□□□□□ -0.32
CLN3-264ENST00000637985 CALHM1Q8IU99 346 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 MKXQ8IYA7 352 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 C10orf67Q8IYJ2 551 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 FAM185AQ8N0U4 392 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 TFAP2CQ92754 450 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 PALMDQ9NP74 551 aa13.05□□□□□ -0.32
CLN3-264ENST00000637985 hCG_1809904A0A1W2PP81 198 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 A0A1W2PPE2 198 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 FAM230AA0A1W2PPH8 454 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 A0A1W2PR64 198 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 A0A1W2PRV1 198 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 UBCP0CG48 685 aaKnown RBP13.04□□□□□ -0.32
CLN3-264ENST00000637985 FUT6P51993 359 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 LGALS4P56470 323 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 SNRPGP62308 76 aaKnown RBP13.04□□□□□ -0.32
CLN3-264ENST00000637985 ACTC1P68032 377 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 ACTA1P68133 377 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 UBE2V2Q15819 145 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 PLA1AQ53H76 456 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 MEDAGQ5VYS4 303 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 KCTD20Q7Z5Y7 419 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 LHFPL4Q7Z7J7 247 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 ANGPTL5Q86XS5 388 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 TRMT10AQ8TBZ6 339 aaKnown RBP13.04□□□□□ -0.32
CLN3-264ENST00000637985 RPS4Y2Q8TD47 263 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 CHST5Q9GZS9 411 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 HEXA-AS1Q9H8Q6 139 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 C19orf12Q9NSK7 152 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 GNG8Q9UK08 70 aa13.04□□□□□ -0.32
CLN3-264ENST00000637985 SNTNA6NMZ2 147 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 H3BNX3 289 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 EI24O14681 340 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 RAMP3O60896 148 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 ENTPD6O75354 484 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 TK1P04183 234 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 ALDH3A2P51648 485 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 KPNB1Q14974 876 aaKnown RBP13.03□□□□□ -0.32
CLN3-264ENST00000637985 TMEM200BQ69YZ2 307 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 PRSS35Q8N3Z0 413 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 C11orf42Q8N5U0 333 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 PP6455Q8WZ26 134 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 ABCB10Q9NRK6 738 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 OR14J1Q9UGF5 321 aa13.03□□□□□ -0.32
CLN3-264ENST00000637985 PCLOQ9Y6V0 5065 aa13.02□□□□□ -0.32
CLN3-264ENST00000637985 LOC107986453A0A1B0GWG9 222 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 J3QRE1 110 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 CEBPDP49716 269 aaPredicted RBP13.02□□□□□ -0.33
CLN3-264ENST00000637985 TP53I3Q53FA7 332 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 TMEM244Q5VVB8 128 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 FDX2Q6P4F2 183 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms