RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ST6GALNAC5Q9BVH7 336 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 MRPL37Q9BZE1 423 aaKnown RBP14.31□□□□□ -0.12
CLN3-252ENST00000636907 PLK3Q9H4B4 646 aa14.31□□□□□ -0.12
CLN3-252ENST00000636907 ZSCAN5BA6NJL1 495 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 ARPC1BO15143 372 aaKnown RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 PMP2P02689 132 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 PGA5P0DJD9 388 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 TBPP20226 339 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 DUSP1P28562 367 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 ERVK11-1P61568 191 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 MICBQ29980 383 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 MPV17LQ2QL34 196 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 SLC22A25Q6T423 547 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 OR2Z1Q8NG97 314 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 HPS1Q92902 700 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 PPP1R14BQ96C90 147 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 CMSS1Q9BQ75 279 aaKnown RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 TLNRD1Q9H1K6 362 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 RHOFQ9HBH0 211 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 NPDC1Q9NQX5 325 aaPredicted RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 CA10Q9NS85 328 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 ZNF701Q9NV72 531 aaPredicted RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 ERRFI1Q9UJM3 462 aaPredicted RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 PLEKHA6Q9Y2H5 1048 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 ACACBO00763 2458 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 COL6A6A6NMZ7 2263 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 A0A0A6YYJ9 748 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 UBE2QL1A1L167 161 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 DISC1C4P0D8 188 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 PEX14O75381 377 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 AMY2BP19961 511 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 GRNP28799 593 aaKnown RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 IKZF1Q13422 519 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 IL13RA2Q14627 380 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 MPPED2Q15777 294 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 ZNF826PQ6ZT77 177 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 BEST4Q8NFU0 473 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 GIMAP1Q8WWP7 306 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 MRPL24Q96A35 216 aaKnown RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 NRIP2Q9BQI9 281 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 BEX2Q9BXY8 128 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 ZNF442Q9H7R0 627 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 BEX1Q9HBH7 125 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 NGBQ9NPG2 151 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 TAAR3PQ9P1P4 343 aa14.3□□□□□ -0.12
CLN3-252ENST00000636907 RCC2Q9P258 522 aaKnown RBP14.3□□□□□ -0.12
CLN3-252ENST00000636907 C7orf66A4D0T2 115 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 HMX3A6NHT5 357 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 PYCARD-AS1I3L0S3 204 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 PMELP40967 661 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 GMFBP60983 142 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 MRPS15P82914 257 aaKnown RBP14.29□□□□□ -0.12
CLN3-252ENST00000636907 IDO2Q6ZQW0 420 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 LINC00596Q86U02 117 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 AKAP14Q86UN6 197 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 Q8IYB0 196 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 CA5BP1Q8WTZ4 195 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 SCP2D1Q9UJQ7 156 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 ATP23Q9Y6H3 246 aa14.29□□□□□ -0.12
CLN3-252ENST00000636907 IGKV1D-8A0A087WSZ0 117 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 A0A1B0GUH1 482 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 PLSCR5A0PG75 271 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 A6NLC8 198 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 BOLA2-SMG1P6H3BVE0 249 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 HNRNPCP07910 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLN3-252ENST00000636907 ACAA1P09110 424 aaPredicted RBP14.28□□□□□ -0.12
CLN3-252ENST00000636907 CD200P41217 278 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 SELENOVP59797 346 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 MZT1Q08AG7 82 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 SCGB2B2Q4G0G5 96 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 ACTBL2Q562R1 376 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 ADAM5Q6NVV9 412 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 WDR82Q6UXN9 313 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 POC1AQ8NBT0 407 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 LINC01560Q8TB33 94 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 PRR7Q8TB68 274 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 GHITMQ9H3K2 345 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 UFSP2Q9NUQ7 469 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 SLC2A8Q9NY64 477 aa14.28□□□□□ -0.12
CLN3-252ENST00000636907 FAM221AA4D161 298 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 TPD52L2O43399 206 aaKnown RBP14.27□□□□□ -0.12
CLN3-252ENST00000636907 NOS1APO75052 506 aaPredicted RBP14.27□□□□□ -0.12
CLN3-252ENST00000636907 NXPH2O95156 264 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 FCGR3AP08637 254 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 ANXA7P20073 488 aaKnown RBP14.27□□□□□ -0.12
CLN3-252ENST00000636907 DTYMKP23919 212 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 VAX1Q5SQQ9 334 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 NCMAPQ5T1S8 102 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 OR13C8Q8NGS7 320 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 ELMOD3Q96FG2 381 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 PRRT1Q99946 306 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 ESRP2Q9H6T0 727 aaKnown RBP14.27□□□□□ -0.12
CLN3-252ENST00000636907 KCNJ16Q9NPI9 418 aa14.27□□□□□ -0.12
CLN3-252ENST00000636907 TRAV24A0A0B4J272 114 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 SPRY3O43610 288 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 PTBP3O95758 552 aaKnown RBP14.26□□□□□ -0.13
CLN3-252ENST00000636907 TRAPPC2P0DI81 140 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 TRAPPC2BP0DI82 140 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 UQCRFS1P47985 274 aa14.26□□□□□ -0.13
CLN3-252ENST00000636907 MECP2P51608 486 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms