RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 SHANK1Q9Y566 2161 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 CACNA1AO00555 2505 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 IGHV3-64DA0A0J9YX35 117 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 CCL21O00585 134 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 SSNA1O43805 119 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 GLRXP35754 106 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 OR3A3P47888 321 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 MECP2P51608 486 aaKnown RBP18.26■□□□□ 0.51
SPAST-204ENST00000621856 RPS23P62266 143 aaKnown RBP18.26■□□□□ 0.51
SPAST-204ENST00000621856 ZNF154Q13106 437 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 IKZF1Q13422 519 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 GLDNQ6ZMI3 551 aaPredicted RBP18.26■□□□□ 0.51
SPAST-204ENST00000621856 SEC22CQ9BRL7 303 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 MSL2Q9HCI7 577 aa18.26■□□□□ 0.51
SPAST-204ENST00000621856 IL5P05113 134 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 NKX6-1P78426 367 aaPredicted RBP18.25■□□□□ 0.51
SPAST-204ENST00000621856 DAZAP2Q15038 168 aaPredicted RBP18.25■□□□□ 0.51
SPAST-204ENST00000621856 FCN2Q15485 313 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 CHRFAM7AQ494W8 412 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 VAX1Q5SQQ9 334 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 TMEM108Q6UXF1 575 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 Q6ZR03 302 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 LINC00596Q86U02 117 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 SPERTQ8NA61 448 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 KDF1Q8NAX2 398 aaPredicted RBP18.25■□□□□ 0.51
SPAST-204ENST00000621856 OR13C8Q8NGS7 320 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 RHOFQ9HBH0 211 aa18.25■□□□□ 0.51
SPAST-204ENST00000621856 RANGRFQ9HD47 186 aaPredicted RBP18.25■□□□□ 0.51
SPAST-204ENST00000621856 TMEM82A0PJX8 343 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 F5H5P2 479 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 CDIPTO14735 213 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 HPXP02790 462 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 DTYMKP23919 212 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 DUSP1P28562 367 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 MSMPQ1L6U9 139 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 CD276Q5ZPR3 534 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 SSX8Q7RTT4 187 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 LRP11Q86VZ4 500 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 Q8IYB0 196 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 ING3Q9NXR8 418 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 EDARQ9UNE0 448 aa18.24■□□□□ 0.51
SPAST-204ENST00000621856 VSIG10L2P0DP72 767 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 ZNF250P15622 560 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 PMELP40967 661 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 KLF3P57682 345 aaPredicted RBP18.23■□□□□ 0.51
SPAST-204ENST00000621856 TSPAN5P62079 268 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 IL13RA2Q14627 380 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 SLC36A1Q7Z2H8 476 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 PIAS4Q8N2W9 510 aaPredicted RBP18.23■□□□□ 0.51
SPAST-204ENST00000621856 DMRTB1Q96MA1 342 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 CHST6Q9GZX3 395 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 H3BUI4 141 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 TPD52L2O43399 206 aaKnown RBP18.23■□□□□ 0.51
SPAST-204ENST00000621856 FCGR3AP08637 254 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 PTAFRP25105 342 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 ASCL1P50553 236 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 ARPC4P59998 168 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 MZT1Q08AG7 82 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 TMED4Q7Z7H5 227 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 ARRDC1Q8N5I2 433 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 OR5AP2Q8NGF4 316 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 CCDC107Q8WV48 283 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 MED30Q96HR3 178 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 SYT3Q9BQG1 590 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 EHFQ9NZC4 300 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 ZNF69Q9UC07 566 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 SPTA1P02549 2419 aa18.23■□□□□ 0.51
SPAST-204ENST00000621856 FAM221AA4D161 298 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 A6NLC8 198 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 CREBL2O60519 120 aaPredicted RBP18.22■□□□□ 0.51
SPAST-204ENST00000621856 IGHV3-13P01766 116 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 THBDP07204 575 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 PGA5P0DJD9 388 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 GMFBP60983 142 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 TMEM17Q86X19 198 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 NEK7Q8TDX7 302 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 TMEM171Q8WVE6 324 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 FYTTD1Q96QD9 318 aaKnown RBP18.22■□□□□ 0.51
SPAST-204ENST00000621856 PCNX1Q96RV3 2341 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 PPA2Q9H2U2 334 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 CHMP1AQ9HD42 196 aaPredicted RBP18.22■□□□□ 0.51
SPAST-204ENST00000621856 C12orf4Q9NQ89 552 aa18.22■□□□□ 0.51
SPAST-204ENST00000621856 RCC2Q9P258 522 aaKnown RBP18.22■□□□□ 0.51
SPAST-204ENST00000621856 MCRIP1C9JLW8 97 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 C3orf80F5H4A9 247 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 ERVH48-1M5A8F1 160 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 NXPH2O95156 264 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 PPP3CBP16298 524 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 ATPAF1Q5TC12 328 aaPredicted RBP18.21■□□□□ 0.51
SPAST-204ENST00000621856 PRAMEF6Q5VXH4 476 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 ZDHHC22Q8N966 263 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 OR2Z1Q8NG97 314 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 SPACA1Q9HBV2 294 aa18.21■□□□□ 0.51
SPAST-204ENST00000621856 IGKV1D-8A0A087WSZ0 117 aa18.2■□□□□ 0.5
SPAST-204ENST00000621856 FAM90A27PA6NNH2 459 aa18.2■□□□□ 0.5
SPAST-204ENST00000621856 SNRPGP15A8MWD9 76 aa18.2■□□□□ 0.5
SPAST-204ENST00000621856 SDCBPO00560 298 aaPredicted RBP18.2■□□□□ 0.5
SPAST-204ENST00000621856 HSPB6O14558 160 aa18.2■□□□□ 0.5
SPAST-204ENST00000621856 CHRNB4P30926 498 aa18.2■□□□□ 0.5
SPAST-204ENST00000621856 SELENOVP59797 346 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms