RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 H3BUX3 64 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 APOC4-APOC2K7ER74 178 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 PLPP1O14494 284 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ATP6V0E1O15342 81 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 EIF3HO15372 352 aaKnown RBP eCLIP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 IGF2P01344 180 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 APOC2P02655 101 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 AMBPP02760 352 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 SERPINE2P07093 398 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 WNT2P09544 360 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 BCKDHAP12694 445 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 OGNP20774 298 aaKnown RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 KITLGP21583 273 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ARR3P36575 388 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 PSPHP78330 225 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 SARNPP82979 210 aaKnown RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 GLO1Q04760 184 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 SELENBP1Q13228 472 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 MRPL23Q16540 153 aaKnown RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 TRMT5Q32P41 509 aaKnown RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 FAM106AQ4KMX7 169 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 RFTN2Q52LD8 501 aaPredicted RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF774Q6NX45 483 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF730Q6ZMV8 503 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 MDP1Q86V88 176 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 LRRC28Q86X40 367 aaPredicted RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ERI1Q8IV48 349 aaKnown RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ZBED8Q8IZ13 594 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 RNF175Q8N4F7 328 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 DHRSXQ8N5I4 330 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ICA1LQ8NDH6 482 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 TMEM104Q8NE00 496 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 PIGXQ8TBF5 258 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ACTL9Q8TC94 416 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 WDR34Q96EX3 536 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 MBOAT4Q96T53 435 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 FMO2Q99518 471 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 SLC29A1Q99808 456 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF649Q9BS31 505 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 PAPOLGQ9BWT3 736 aaKnown RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 FRMD8P1Q9BZ68 369 aaPredicted RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 HDHD2Q9H0R4 259 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF702PQ9H963 129 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 C3orf14Q9HBI5 128 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 FBXO6Q9NRD1 293 aaPredicted RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 FLVCR2Q9UPI3 526 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF256Q9Y2P7 627 aaPredicted RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 EXOSC1Q9Y3B2 195 aaKnown RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 HYOU1Q9Y4L1 999 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 ATP6V1DQ9Y5K8 247 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 TSSC4Q9Y5U2 329 aaPredicted RBP3.35□□□□□ -1.87
LINC00540-201ENST00000611481 DSPPQ9NZW4 1301 aa3.35□□□□□ -1.87
LINC00540-201ENST00000611481 NUP214P35658 2090 aaPredicted RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 TRAV6A0A075B6T7 132 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 A0A0A6YYD4 124 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 IGLV9-49A0A0B4J1Y8 123 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 KBTBD11-OT1A0A1B0GTJ5 212 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 hCG_38984A0A1B0GV85 526 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF587BE7ETH6 402 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 SULT2B1O00204 365 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 SLC1A7O00341 560 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 DIRAS1O95057 198 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 PMS2P2O95744 297 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 TMEM50AO95807 157 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 NUDT14O95848 222 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 GAPDHP04406 335 aaKnown RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 IFNA6P05013 189 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 ZNF35P13682 527 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 HLA-DOBP13765 273 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 KCNJ3P48549 501 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 KLF3P57682 345 aaPredicted RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 GPX6P59796 221 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 BTG1P62324 171 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 GAGE5Q13069 117 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 GAGE6Q13070 117 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 FASTKD3Q14CZ7 662 aaKnown RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 UBE2V2Q15819 145 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 VAMP3Q15836 100 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 MS4A18Q3C1V0 323 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 ATP6AP1LQ52LC2 224 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 TP53I3Q53FA7 332 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 SPRNQ5BIV9 151 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 PAGE2BQ5JRK9 111 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 SPANXN4Q5MJ08 99 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 STEAP4Q687X5 459 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 CCDC137Q6PK04 289 aaKnown RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 CYS1Q717R9 158 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 MRPL21Q7Z2W9 205 aaKnown RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 ABHD12BQ7Z5M8 362 aaPredicted RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 KRTAP7-1Q8IUC3 87 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 RBM45Q8IUH3 476 aaKnown RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 OR51L1Q8NGJ5 315 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 CNIH3Q8TBE1 160 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 AENQ8WTP8 325 aaKnown RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 GEMIN6Q8WXD5 167 aaKnown RBP3.34□□□□□ -1.87
LINC00540-201ENST00000611481 MYDGFQ969H8 173 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 UBE2E3Q969T4 207 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 ZHX1-C8orf76Q96EF9 292 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 CMTM7Q96FZ5 175 aa3.34□□□□□ -1.87
LINC00540-201ENST00000611481 SDSLQ96GA7 329 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 315.4 ms