RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 REEP1Q9H902 201 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 ISG20L2Q9H9L3 353 aaKnown RBP4.39□□□□□ -1.71
VPS53-219ENST00000576019 C1orf109Q9NX04 203 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 CTSZQ9UBR2 303 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 VSIG4Q9Y279 399 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 KLF12Q9Y4X4 402 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 TCHHQ07283 1943 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 SCN1AP35498 2009 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 SCN2AQ99250 2005 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 ANKRD65E5RJM6 399 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 H7C1H1 209 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 H7C2Y5 167 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 PLPP3O14495 311 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 SOCS3O14543 225 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 SRP72O76094 671 aaKnown RBP4.38□□□□□ -1.71
VPS53-219ENST00000576019 AHSA1O95433 338 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 HPRT1P00492 218 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 RAB5AP20339 215 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 GNRHRP30968 328 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 UBE2E1P51965 193 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 OR2B8PP59922 312 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 TSPAN5P62079 268 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 ST3GAL4Q11206 333 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 NRF1Q16656 503 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 ZSCAN26Q16670 478 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 LRRC36Q1X8D7 754 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 C1orf146Q5VVC0 180 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 UBE2UQ5VVX9 321 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 C8orf74Q6P047 294 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 USP43Q70EL4 1123 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 COX15Q7KZN9 410 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 MRPL55Q7Z7F7 128 aaKnown RBP4.38□□□□□ -1.71
VPS53-219ENST00000576019 ZNF677Q86XU0 584 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 STK40Q8N2I9 435 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 CCDC71LQ8N9Z2 235 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 OR4F15Q8NGB8 312 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 OR52E2Q8NGJ4 325 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 TMEM230Q96A57 120 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 FGGYQ96C11 551 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 CHMP6Q96FZ7 201 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 UBE2E2Q96LR5 201 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 OR5M11Q96RB7 305 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 P2RX4Q99571 388 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 KLF6Q99612 283 aaPredicted RBP4.38□□□□□ -1.71
VPS53-219ENST00000576019 ABCB10Q9NRK6 738 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 CES1P1Q9UKY3 287 aa4.38□□□□□ -1.71
VPS53-219ENST00000576019 FARSAQ9Y285 508 aaKnown RBP4.38□□□□□ -1.71
VPS53-219ENST00000576019 NUP210LQ5VU65 1888 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 A0A1W2PPR1 153 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 GOLGA8IPA6NC78 632 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 GOLGA8JA6NMD2 632 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 GOLGA8KD6RF30 607 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 GOLGA8MH3BSY2 632 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 PIRO00625 290 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 UTS2O95399 124 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 RAB3DO95716 219 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 IGLV1-44P01699 117 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 AMBPP02760 352 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 EIF4EP06730 217 aaKnown RBP4.37□□□□□ -1.71
VPS53-219ENST00000576019 ZDHHC11BP0C7U3 371 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 PGA5P0DJD9 388 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 CD37P11049 281 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 FMO3P31513 532 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 PRPS1P60891 318 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 STX4Q12846 297 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 BNIP2Q12982 314 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 ZNF266Q14584 549 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 GUSBP1Q15486 140 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 BSXQ3C1V8 233 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 OR2B11Q5JQS5 317 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 GCSAMLQ5JQS6 135 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 RESP18Q5W5W9 173 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 STRADAQ7RTN6 431 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 FAM220AQ7Z4H9 259 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 FAM71AQ8IYT1 594 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 ATP6V1C2Q8NEY4 427 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 OR51S1Q8NGJ8 323 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 OR2L2Q8NH16 312 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 FAM76AQ8TAV0 307 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 FAM222BQ8WU58 562 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 TMEM234Q8WY98 164 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 PPP1R14BQ96C90 147 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 SIGLEC12Q96PQ1 595 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 GPR21Q99679 349 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 REG4Q9BYZ8 158 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 SRMSQ9H3Y6 488 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 C6orf50Q9HD87 102 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 TREX1Q9NSU2 369 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 MED29Q9NX70 200 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 XCL2Q9UBD3 114 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 ZNF107Q9UII5 783 aaPredicted RBP4.37□□□□□ -1.71
VPS53-219ENST00000576019 OR51B2Q9Y5P1 312 aa4.37□□□□□ -1.71
VPS53-219ENST00000576019 PCM1Q15154 2024 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 PLXNB1O43157 2135 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 A0A0B4J2A0 478 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 A0A1B0GTI1 187 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 ERI2A8K979 691 aaKnown RBP4.36□□□□□ -1.71
VPS53-219ENST00000576019 TBL1XO60907 577 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 KBTBD11O94819 623 aa4.36□□□□□ -1.71
VPS53-219ENST00000576019 DUSP14O95147 198 aaKnown RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms