RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ZNF891A8MT65 544 aaPredicted RBP13.54□□□□□ -0.24
CIITA-204ENST00000570546 TBC1D26Q86UD7 250 aa13.54□□□□□ -0.24
CIITA-204ENST00000570546 GEMIN2O14893 280 aaKnown RBP13.54□□□□□ -0.24
CIITA-204ENST00000570546 NGFRP08138 427 aa13.54□□□□□ -0.24
CIITA-204ENST00000570546 CRYBA2P53672 197 aa13.54□□□□□ -0.24
CIITA-204ENST00000570546 POLR2GP62487 172 aaKnown RBP eCLIP13.54□□□□□ -0.24
CIITA-204ENST00000570546 C1QTNF12Q5T7M4 302 aa13.54□□□□□ -0.24
CIITA-204ENST00000570546 RGS7BPQ6MZT1 257 aaPredicted RBP13.54□□□□□ -0.24
CIITA-204ENST00000570546 SF3B5Q9BWJ5 86 aaKnown RBP13.54□□□□□ -0.24
CIITA-204ENST00000570546 OCIAD1Q9NX40 245 aa13.54□□□□□ -0.24
CIITA-204ENST00000570546 GALR2O43603 387 aaPredicted RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 RPS16P62249 146 aaKnown RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 SSPNQ14714 243 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 CBLN2Q8IUK8 224 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 MRPL24Q96A35 216 aaKnown RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 SLC25A38Q96DW6 304 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 DXOO77932 396 aaKnown RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 AARDQ4LEZ3 155 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 SLC22A18ASQ8N1D0 253 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 TXN2Q99757 166 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 FAM103A1Q9BTL3 118 aaKnown RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 SLC35D1Q9NTN3 355 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 BRCA1P38398 1863 aaKnown RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 K7EQM0 130 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 TTRP02766 147 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 CST2P09228 141 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 FSTP19883 344 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 MEOX1P50221 254 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 RPS4XP62701 263 aaKnown RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 FFAR4Q5NUL3 377 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 FHL5Q5TD97 284 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 LIAT1Q6ZQX7 453 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 H0Y8G0 127 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 TRAF3IP2O43734 574 aaPredicted RBP13.53□□□□□ -0.24
CIITA-204ENST00000570546 CYC1P08574 325 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 OR2M3Q8NG83 312 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 OR6S1Q8NH40 331 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 HIF1ANQ9NWT6 349 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 ATP23Q9Y6H3 246 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 NINQ8N4C6 2090 aa13.53□□□□□ -0.24
CIITA-204ENST00000570546 CNIH1O95406 144 aa13.52□□□□□ -0.24
CIITA-204ENST00000570546 CD200P41217 278 aa13.52□□□□□ -0.24
CIITA-204ENST00000570546 GNB1P62873 340 aa13.52□□□□□ -0.24
CIITA-204ENST00000570546 ERHP84090 104 aaKnown RBP13.52□□□□□ -0.24
CIITA-204ENST00000570546 COMMD5Q9GZQ3 224 aa13.52□□□□□ -0.24
CIITA-204ENST00000570546 A0A1W2PR80 420 aa13.52□□□□□ -0.24
CIITA-204ENST00000570546 DYNLT3P51808 116 aa13.52□□□□□ -0.24
CIITA-204ENST00000570546 ZP4Q12836 540 aa13.52□□□□□ -0.24
CIITA-204ENST00000570546 MAP1LC3B2A6NCE7 125 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 IL11P20809 199 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 FABP9Q0Z7S8 132 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 KISS1RQ969F8 398 aaPredicted RBP13.52□□□□□ -0.25
CIITA-204ENST00000570546 MAP1LC3BQ9GZQ8 125 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 ZNF355PQ9NSJ1 428 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 RBFOX3A6NFN3 312 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 TLE1Q04724 770 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 AWAT1Q58HT5 328 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 AMELYQ99218 206 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 PPP1R14DQ9NXH3 145 aa13.52□□□□□ -0.25
CIITA-204ENST00000570546 UPK3AO75631 287 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 OR5G3P0C626 314 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 FABP4P15090 132 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 HES1Q14469 280 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 FSCN3Q9NQT6 498 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 ZMIZ1Q9ULJ6 1067 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 CLDN34H7C241 214 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 PNLIPP16233 465 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 DEFB109BQ30KR1 87 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 SMIM15Q7Z3B0 74 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 HOGA1Q86XE5 327 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 CPEB3Q8NE35 698 aaKnown RBP13.51□□□□□ -0.25
CIITA-204ENST00000570546 ZDHHC11Q9H8X9 412 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.51□□□□□ -0.25
CIITA-204ENST00000570546 M0R1X1 148 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 CLN5O75503 358 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 FABP1P07148 127 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 SMIM10L1P0DMW3 83 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 ZNF17P17021 662 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 IL24Q13007 206 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 ZNF766Q5HY98 468 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 FAM219AQ8IW50 185 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 SIGLECL1Q8N7X8 197 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 SMIM10Q96HG1 83 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 TMPRSS5Q9H3S3 457 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 TRDCB7Z8K6 153 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 RAB5AP20339 215 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 PCM1Q15154 2024 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 PSME4Q14997 1843 aa13.51□□□□□ -0.25
CIITA-204ENST00000570546 PIN1P1O15428 100 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 BCL3P20749 454 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 PPP1CBP62140 327 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 CHST5Q9GZS9 411 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 LOC285556D6RIA3 1793 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 DVL1O14640 695 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 IFI6P09912 130 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 BPIFB3P59826 476 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 CEBPEQ15744 281 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 IGFBP7Q16270 282 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 OR2I1PQ8NGU4 316 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms