RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 BLCAPP62952 87 aa12□□□□□ -0.49
CLN3-228ENST00000567804 ACTG2P63267 376 aa12□□□□□ -0.49
CLN3-228ENST00000567804 ACTC1P68032 377 aa12□□□□□ -0.49
CLN3-228ENST00000567804 ACTA1P68133 377 aa12□□□□□ -0.49
CLN3-228ENST00000567804 EDDM3AQ14507 147 aa12□□□□□ -0.49
CLN3-228ENST00000567804 MINOS1Q5TGZ0 78 aa12□□□□□ -0.49
CLN3-228ENST00000567804 CBR4Q8N4T8 237 aa12□□□□□ -0.49
CLN3-228ENST00000567804 YIPF7Q8N8F6 280 aa12□□□□□ -0.49
CLN3-228ENST00000567804 MRAPQ8TCY5 172 aa12□□□□□ -0.49
CLN3-228ENST00000567804 OR5M11Q96RB7 305 aa12□□□□□ -0.49
CLN3-228ENST00000567804 TBX5Q99593 518 aa12□□□□□ -0.49
CLN3-228ENST00000567804 CHST5Q9GZS9 411 aa12□□□□□ -0.49
CLN3-228ENST00000567804 NECAP2Q9NVZ3 263 aa12□□□□□ -0.49
CLN3-228ENST00000567804 HILPDAQ9Y5L2 63 aa12□□□□□ -0.49
CLN3-228ENST00000567804 MINOS1-NBL1R4GNA1 71 aa12□□□□□ -0.49
CLN3-228ENST00000567804 hADV38S2A0JD32 116 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 PEX14O75381 377 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 INMTO95050 263 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 VDAC2P45880 294 aaPredicted RBP11.99□□□□□ -0.49
CLN3-228ENST00000567804 TMEM95Q3KNT9 176 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 ZIK1Q3SY52 487 aaPredicted RBP11.99□□□□□ -0.49
CLN3-228ENST00000567804 ARSJQ5FYB0 599 aaPredicted RBP11.99□□□□□ -0.49
CLN3-228ENST00000567804 SLC25A26Q70HW3 274 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 EGFL6Q8IUX8 553 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 PQLC1Q8N2U9 271 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 ZNF676Q8N7Q3 588 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 TPRX1Q8N7U7 411 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 OR52N4Q8NGI2 321 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 EMG1Q92979 244 aaKnown RBP11.99□□□□□ -0.49
CLN3-228ENST00000567804 PHF21AQ96BD5 680 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 BORCS8Q96FH0 119 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 MBOAT4Q96T53 435 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 SLC29A1Q99808 456 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 SEBOXQ9HB31 216 aaPredicted RBP11.99□□□□□ -0.49
CLN3-228ENST00000567804 AURKAIP1Q9NWT8 199 aaPredicted RBP11.99□□□□□ -0.49
CLN3-228ENST00000567804 IL36RNQ9UBH0 155 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 LINC00312Q9Y6C7 94 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 SESN1Q9Y6P5 492 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 DNAH9Q9NYC9 4486 aa11.99□□□□□ -0.49
CLN3-228ENST00000567804 IGHV2-26A0A0B4J1V2 119 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 E9PQ18 207 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 ALX3O95076 343 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 HAND1O96004 215 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 IGHA1P01876 353 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 ALDOBP05062 364 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 AZGP1P25311 298 aaKnown RBP11.98□□□□□ -0.49
CLN3-228ENST00000567804 PEX2P28328 305 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 ALDH3A2P51648 485 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 LOXL3P58215 753 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 ZNF91Q05481 1191 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 SLC34A1Q06495 639 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 GRK1Q15835 563 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 CCDC54Q8NEL0 328 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 NDNFQ8TB73 568 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 SGCDQ92629 289 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 OCSTAMPQ9BR26 566 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 CHST6Q9GZX3 395 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 TMEM133Q9H2Q1 129 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 WARS2Q9UGM6 360 aaKnown RBP11.98□□□□□ -0.49
CLN3-228ENST00000567804 ENOPH1Q9UHY7 261 aa11.98□□□□□ -0.49
CLN3-228ENST00000567804 A0A1W2PQL4 384 aaPredicted RBP11.97□□□□□ -0.49
CLN3-228ENST00000567804 METTL15A6NJ78 407 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 FAM90A22PA8MWA6 464 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 PSPNO60542 156 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 OR2T7P0C7T2 308 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 NPBWR2P48146 333 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 Q8IYB0 196 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 C10orf67Q8IYJ2 551 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 ENTHD1Q8IYW4 607 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 PRSS35Q8N3Z0 413 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 C10orf35Q96D05 121 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 ADI1Q9BV57 179 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 CLEC7AQ9BXN2 247 aa11.97□□□□□ -0.49
CLN3-228ENST00000567804 LOC107986453A0A1B0GWG9 222 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 SULT1C4O75897 302 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 APOL3O95236 402 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 BAG2O95816 211 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 SERPINA3P01011 423 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 GABRR1P24046 479 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 HTR1FP30939 366 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 RBP2P50120 134 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 CD83Q01151 205 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 ZNF146Q15072 292 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 FOXB2Q5VYV0 432 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 ZBTB49Q6ZSB9 765 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 DNAAF1Q8NEP3 725 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 OR10H4Q8NGA5 316 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 OR4P4Q8NGL7 312 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 PP6455Q8WZ26 134 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 C9orf16Q9BUW7 83 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 RBFOX1Q9NWB1 397 aaKnown RBP11.96□□□□□ -0.49
CLN3-228ENST00000567804 AASSQ9UDR5 926 aa11.96□□□□□ -0.49
CLN3-228ENST00000567804 TRBV2A0A0J9YWF9 115 aa11.95□□□□□ -0.5
CLN3-228ENST00000567804 MGST3O14880 152 aa11.95□□□□□ -0.5
CLN3-228ENST00000567804 ENTPD6O75354 484 aa11.95□□□□□ -0.5
CLN3-228ENST00000567804 MMP23AO75900 390 aa11.95□□□□□ -0.5
CLN3-228ENST00000567804 UBCP0CG48 685 aaKnown RBP11.95□□□□□ -0.5
CLN3-228ENST00000567804 PRKACAP17612 351 aa11.95□□□□□ -0.5
CLN3-228ENST00000567804 CD33P20138 364 aa11.95□□□□□ -0.5
CLN3-228ENST00000567804 BCL3P20749 454 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms