RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 XPNPEP2O43895 674 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 KDM4BO94953 1096 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 HAND1O96004 215 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 ALDOBP05062 364 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 TMEM225BP0DP42 221 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 BCL3P20749 454 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 NPBWR2P48146 333 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 CEBPDP49716 269 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-204ENST00000553324 ACSM1Q08AH1 577 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 YIF1BQ5BJH7 314 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 RUSC1-AS1Q66K80 236 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 TMEM200BQ69YZ2 307 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 C16orf87Q6PH81 154 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 OR8H2Q8N162 312 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 SSMEM1Q8WWF3 244 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 GHSRQ92847 366 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 HEXA-AS1Q9H8Q6 139 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 ELL3Q9HB65 397 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-204ENST00000553324 RBFOX1Q9NWB1 397 aaKnown RBP12.59□□□□□ -0.39
SHMT2-204ENST00000553324 SCN3BQ9NY72 215 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 POMT1Q9Y6A1 747 aa12.59□□□□□ -0.39
SHMT2-204ENST00000553324 STAB1Q9NY15 2570 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 MYL12BO14950 172 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 HOXA3O43365 443 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-204ENST00000553324 SPRY1O43609 319 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-204ENST00000553324 ZNF737O75373 536 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 PRKACAP17612 351 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 SOX2P48431 317 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 PPP3R1P63098 170 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 MEF2CQ06413 473 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-204ENST00000553324 FOXL1Q12952 345 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 C6orf141Q5SZD1 244 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 RNLSQ5VYX0 342 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 DMKNQ6E0U4 476 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-204ENST00000553324 XAF1Q6GPH4 301 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 LAIR2Q6ISS4 152 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 ZNF529Q6P280 563 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 AHSA2Q719I0 299 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 PDZD9Q8IXQ8 264 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 ZNF485Q8NCK3 441 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 PXT1Q8NFP0 134 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 OR4M1Q8NGD0 313 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 TNFRSF14Q92956 283 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 MYDGFQ969H8 173 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 TMEM106AQ96A25 262 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 RFT1Q96AA3 541 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 SPACA5Q96QH8 159 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 GPER1Q99527 375 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 TMEM138Q9NPI0 162 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 C19orf12Q9NSK7 152 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 CKLFQ9UBR5 152 aa12.58□□□□□ -0.4
SHMT2-204ENST00000553324 SOX21Q9Y651 276 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-204ENST00000553324 FUOMA2VDF0 154 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 RNASEK-C17orf49H0YIS7 233 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 NPFFO15130 113 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 ANGPTL7O43827 346 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 CD1AP06126 327 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 FBP1P09467 338 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 HKR1P10072 659 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 GABRR1P24046 479 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 C21orf33P30042 268 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-204ENST00000553324 WNT4P56705 351 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 EDDM3BP56851 147 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 PIP4P2Q8N4L2 257 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 NRG4Q8WWG1 115 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 THRSPQ92748 146 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 C1orf147Q96MC9 270 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-204ENST00000553324 DUX5Q96PT3 197 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 DPAGT1Q9H3H5 408 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 EXOSC4Q9NPD3 245 aaKnown RBP12.57□□□□□ -0.4
SHMT2-204ENST00000553324 FKBP14Q9NWM8 211 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 GSTK1Q9Y2Q3 226 aa12.57□□□□□ -0.4
SHMT2-204ENST00000553324 SIRT4Q9Y6E7 314 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-204ENST00000553324 IGKV1-12A0A0C4DH73 117 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 MDFIC2A0A1B0GVS7 189 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 hADV38S2A0JD32 116 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 PTGES3LE9PB15 166 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 MGST3O14880 152 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 IGKV1D-12P01611 117 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 RBP4P02753 201 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 MELTFP08582 738 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 LMO1P25800 156 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 ERP29P30040 261 aaKnown RBP12.56□□□□□ -0.4
SHMT2-204ENST00000553324 HSPA13P48723 471 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 MTNR1BP49286 362 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 AQP4P55087 323 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 ERVFRD-1P60508 538 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 ZP1P60852 638 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 BDH1Q02338 343 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 GRK1Q15835 563 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 Q499Y3 187 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 MIDNQ504T8 468 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 C17orf107Q6ZR85 190 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 SATL1Q86VE3 508 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 LDLRAD3Q86YD5 345 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 NANOGP1Q8N7R0 232 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 CHST4Q8NCG5 386 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 OR5D18Q8NGL1 313 aa12.56□□□□□ -0.4
SHMT2-204ENST00000553324 RGP1Q92546 391 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-204ENST00000553324 PCDHB16Q9NRJ7 776 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms