RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SH2D1BO14796 132 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 CALCRP30988 508 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 F2RL1P55085 397 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 GNG3P63215 75 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 HIKESHIQ53FT3 197 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 HIST2H3PS2Q5TEC6 136 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 ADAT1Q9BUB4 502 aaKnown RBP13.72□□□□□ -0.21
CUX1-211ENST00000546411 PLEKHA3Q9HB20 300 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 TMEM38BQ9NVV0 291 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 ZFHX2Q9C0A1 2572 aaPredicted RBP13.72□□□□□ -0.21
CUX1-211ENST00000546411 LINC00862A6NCI5 91 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 TUBAL3A6NHL2 446 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 ADAM20O43506 726 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 F12P00748 615 aaPredicted RBP13.72□□□□□ -0.21
CUX1-211ENST00000546411 CTXN2P0C2S0 81 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 FSTP19883 344 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 MLF1P58340 268 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 ZNF816Q0VGE8 651 aaPredicted RBP13.72□□□□□ -0.21
CUX1-211ENST00000546411 ZNF766Q5HY98 468 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 DEFB124Q8NES8 71 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 ABHD5Q8WTS1 349 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 WNT2BQ93097 391 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 GPR35Q9HC97 309 aa13.72□□□□□ -0.21
CUX1-211ENST00000546411 HMGB3O15347 200 aaKnown RBP13.71□□□□□ -0.21
CUX1-211ENST00000546411 NAT2P11245 290 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 RAB4BP61018 213 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 TIMM8BQ9Y5J9 83 aaPredicted RBP13.71□□□□□ -0.21
CUX1-211ENST00000546411 KIAA2026Q5HYC2 2103 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 OR6C65A6NJZ3 312 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 TGIF1Q15583 401 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 TEX30Q5JUR7 227 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 WDSUB1Q8N9V3 476 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 ZPBPQ9BS86 351 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 TRAF4Q9BUZ4 470 aaPredicted RBP13.71□□□□□ -0.21
CUX1-211ENST00000546411 OR2H1Q9GZK4 316 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 WDR54Q9H977 334 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 SLC7A10Q9NS82 523 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 B3GAT1Q9P2W7 334 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 SHANK1Q9Y566 2161 aa13.71□□□□□ -0.21
CUX1-211ENST00000546411 IGHV1-45A0A0A0MS14 117 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 DEFB108AA8MXU0 73 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 NKX6-1P78426 367 aaPredicted RBP13.71□□□□□ -0.22
CUX1-211ENST00000546411 PSG4Q00888 419 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 ZNF92Q03936 586 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 C1QL2Q7Z5L3 287 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 GFI1Q99684 422 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 TGIF2Q9GZN2 237 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 NAA60Q9H7X0 242 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 CADP27708 2225 aa13.71□□□□□ -0.22
CUX1-211ENST00000546411 RNASEK-C17orf49H0YIS7 233 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 IGLV3-19P01714 112 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 PLAURQ03405 335 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 C1orf100Q5SVJ3 147 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 SLC25A47Q6Q0C1 308 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 BVESQ8NE79 360 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 ZNF837Q96EG3 531 aaPredicted RBP13.7□□□□□ -0.22
CUX1-211ENST00000546411 RNF212BA8MTL3 300 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 SPINT2O43291 252 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 GLAP06280 429 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 PDZD11Q5EBL8 140 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 FAM209AQ5JX71 171 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 ZNF660Q6AZW8 331 aaPredicted RBP13.7□□□□□ -0.22
CUX1-211ENST00000546411 OR10V1Q8NGI7 309 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 UBE2V2Q15819 145 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 FAM58AQ8N1B3 248 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 OR11L1Q8NGX0 322 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 SLC2A9Q9NRM0 540 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 PILRBQ9UKJ0 227 aa13.7□□□□□ -0.22
CUX1-211ENST00000546411 TRIM77I1YAP6 450 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 RCC1P18754 421 aaPredicted RBP13.69□□□□□ -0.22
CUX1-211ENST00000546411 ADIRFQ15847 76 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 CBLN2Q8IUK8 224 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 ASB13Q8WXK3 278 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 PFDN5Q99471 154 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 SOX15O60248 233 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 CST4P01036 141 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 ISG15P05161 165 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 SFTA3P0C7M3 94 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 PMP22Q01453 160 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 PCOLCEQ15113 449 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 H2BFWTQ7Z2G1 175 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 OR10AD1Q8NGE0 317 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 OR5C1Q8NGR4 320 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 DYNLRB1Q9NP97 96 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 OR5AC2Q9NZP5 309 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 KPTNQ9Y664 436 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 TNFSF4P23510 183 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 UNC119Q13432 240 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 FAM27BQ5VT28 67 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 SKA3Q8IX90 412 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 ZADH2Q8N4Q0 377 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 ALX4Q9H161 411 aaPredicted RBP13.69□□□□□ -0.22
CUX1-211ENST00000546411 NPDC1Q9NQX5 325 aaPredicted RBP13.69□□□□□ -0.22
CUX1-211ENST00000546411 WNK2Q9Y3S1 2297 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 C3orf85A0A1B0GTC6 90 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 B3GALNT1O75752 331 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 RFPL3SP0C7P2 107 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 BCL3P20749 454 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 PJVKQ0ZLH3 352 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 OR13G1Q8NGZ3 307 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms