RNA–Protein interactions for RNA: ENST00000544585.5

CPSF7-222, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 2

Gene CPSF7, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-222	ENST00000544585	PLXNB1	O43157	2135 aa		4.91	□□□□□ -1.62
CPSF7-222	ENST00000544585	CCS	O14618	274 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ARPC1B	O15143	372 aa	Known RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	CHP2	O43745	196 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	LANCL1	O43813	399 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	TPST2	O60704	377 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ECD	O95905	644 aa	Predicted RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	CYB5R3	P00387	301 aa	Predicted RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ASAH2B	P0C7U1	165 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	SLC2A2	P11168	524 aa	Predicted RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	UMPS	P11172	480 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	IDO1	P14902	403 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	KIR2DS4	P43632	304 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	SLC1A6	P48664	564 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	DAP3	P51398	398 aa	Known RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	UGT2B15	P54855	530 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	NANOS3	P60323	173 aa	Known RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ERVK-25	P63136	954 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	CDK6	Q00534	326 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ZSCAN26	Q16670	478 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	LRRC23	Q53EV4	343 aa	Predicted RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	LIPK	Q5VXJ0	399 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	SLC25A47	Q6Q0C1	308 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	FOXL2NB	Q6ZUU3	175 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	SLC30A8	Q8IWU4	369 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	OR8G5	Q8NG78	346 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	OR4S1	Q8NGB4	309 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ZNF420	Q8TAQ5	688 aa	Predicted RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	LHX4	Q969G2	390 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	MAL2	Q969L2	176 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	NABP1	Q96AH0	204 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ZNF479	Q96JC4	524 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	TBX15	Q96SF7	602 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	NKX3-1	Q99801	234 aa	Predicted RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	C1QTNF4	Q9BXJ3	329 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	ROPN1B	Q9BZX4	212 aa	Predicted RBP	4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	TMEM100	Q9NV29	134 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	STARD10	Q9Y365	291 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585	SELENOK	Q9Y6D0	94 aa		4.9	□□□□□ -1.63
CPSF7-222	ENST00000544585		A0A087WZ39	114 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585		A0A0U1RQV5	110 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	TRPC5OS	A6NMA1	111 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	C12orf71	A8MTZ7	269 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	SLC2A10	O95528	541 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	IGF2	P01344	180 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	FBP1	P09467	338 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	RPL35A	P18077	110 aa	Known RBP	4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	PPIB	P23284	216 aa	Known RBP	4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	LAP3	P28838	519 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	RGS6	P49758	472 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	POLR2J	P52435	117 aa	Known RBP	4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	ARF6	P62330	175 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	COX10	Q12887	443 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	MEF2D	Q14814	521 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	MAJIN	Q3KP22	176 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	SLC36A3	Q495N2	470 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	DEFB121	Q5J5C9	76 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	LYPD2	Q6UXB3	125 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	NANOGNB	Q7Z5D8	188 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	NOXO1	Q8NFA2	376 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	OR11L1	Q8NGX0	322 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	GPR148	Q8TDV2	347 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	GIPC3	Q8TF64	312 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	GTF2H4	Q92759	462 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	PINX1	Q96BK5	328 aa	Known RBP	4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	RASD2	Q96D21	266 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	ALG12	Q9BV10	488 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	C20orf27	Q9GZN8	174 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	FAM107B	Q9H098	131 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	TXNIP	Q9H3M7	391 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	CENPH	Q9H3R5	247 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	WDR55	Q9H6Y2	383 aa	Predicted RBP	4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	INIP	Q9NRY2	104 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	VPREB3	Q9UKI3	123 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	DIMT1	Q9UNQ2	313 aa	Known RBP	4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	UGT2A1	Q9Y4X1	527 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	KPTN	Q9Y664	436 aa		4.89	□□□□□ -1.63
CPSF7-222	ENST00000544585	PCLO	Q9Y6V0	5065 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	TRAV38-1	A0A0B4J264	116 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585		A0A1B0GVI7	797 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	TRAPPC13	A5PLN9	417 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	NKX6-3	A6NJ46	265 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	EVPLL	A8MZ36	301 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585		M0QX08	132 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	SLC1A7	O00341	560 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	SDHD	O14521	159 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	HDAC3	O15379	428 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	MAGEB3	O15480	346 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	TYROBP	O43914	113 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	CIDEA	O60543	219 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	MT-ND1	P03886	318 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	LYN	P07948	512 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	GP9	P14770	177 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	MSR1	P21757	451 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	RPL18	Q07020	188 aa	Known RBP	4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	MFGE8	Q08431	387 aa	Predicted RBP	4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	CD47	Q08722	323 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	SCRN3	Q0VDG4	424 aa		4.88	□□□□□ -1.63
CPSF7-222	ENST00000544585	SRSF9	Q13242	221 aa	Known RBP eCLIP	4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms