RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NUDCD3Q8IVD9 361 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 FTMTQ8N4E7 242 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 RNF10Q8N5U6 811 aaKnown RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 ZNF433Q8N7K0 673 aaPredicted RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 TPRX1Q8N7U7 411 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 OR4K2Q8NGD2 314 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 OR4C13Q8NGP0 309 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 OR10D3Q8NH80 312 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 RAB1CQ92928 201 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 NEIL2Q969S2 332 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 PAGE5Q96GU1 130 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 PLEKHA8Q96JA3 519 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 MAPKAP1Q9BPZ7 522 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 KCNS3Q9BQ31 491 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 EHD1Q9H4M9 534 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 HEATR1Q9H583 2144 aaKnown RBP2.61□□□□□ -1.99
CD44-235ENST00000532339 FAM96AQ9H5X1 160 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 TMCO1Q9UM00 188 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 UGT2A1Q9Y4X1 527 aa2.61□□□□□ -1.99
CD44-235ENST00000532339 VPS13BQ7Z7G8 4022 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 IGHV3OR16-13A0A075B7E8 117 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 OR5B21A6NL26 309 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 CLDN25C9JDP6 229 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 H3BQV1 296 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 DNALI1O14645 258 aaPredicted RBP2.6□□□□□ -1.99
CD44-235ENST00000532339 KITLGP21583 273 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 IL12AP29459 219 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 CCR7P32248 378 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 COILP38432 576 aaPredicted RBP2.6□□□□□ -1.99
CD44-235ENST00000532339 GSSP48637 474 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 EVX1P49640 407 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 P2RY4P51582 365 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 RAB38P57729 211 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 RAB10P61026 200 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 TGM3Q08188 693 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 ZNF763Q0D2J5 394 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 ITIH4Q14624 930 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 MICBQ29980 383 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 SAMD4BQ5PRF9 694 aaKnown RBP2.6□□□□□ -1.99
CD44-235ENST00000532339 C9orf129Q5T035 196 aaKnown RBP2.6□□□□□ -1.99
CD44-235ENST00000532339 TMEM107Q6UX40 140 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 SLC25A48Q6ZT89 311 aaKnown RBP2.6□□□□□ -1.99
CD44-235ENST00000532339 UTS2BQ765I0 119 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 GDPD3Q7L5L3 318 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 FAM220AQ7Z4H9 259 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 VRK2Q86Y07 508 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 C6orf223Q8N319 242 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 C17orf78Q8N4C9 275 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 OR4F15Q8NGB8 312 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 OR4F6Q8NGB9 312 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 OR52I1Q8NGK6 324 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 OR9A1PQ8NGU1 263 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 NT5CQ8TCD5 201 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 ABHD3Q8WU67 409 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 PHYHIPLQ96FC7 376 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 CMTM7Q96FZ5 175 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 ARL5BQ96KC2 179 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 PEBP4Q96S96 227 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 PITX2Q99697 317 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 RBBP8Q99708 897 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 RHOXF2Q9BQY4 288 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 FAIM2Q9BWQ8 316 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 C20orf85Q9H1P6 137 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 RANBP3Q9H6Z4 567 aaPredicted RBP2.6□□□□□ -1.99
CD44-235ENST00000532339 ISG20L2Q9H9L3 353 aaKnown RBP2.6□□□□□ -1.99
CD44-235ENST00000532339 OR5V1Q9UGF6 321 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 KIF25Q9UIL4 384 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 IKZF2Q9UKS7 526 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 ARL5AQ9Y689 179 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 V9GY05 133 aa2.6□□□□□ -1.99
CD44-235ENST00000532339 NUPR2A6NF83 97 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 ZFP92A6NM28 416 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 C16orf90A8MZG2 172 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 TRIM49D1C9J1S8 452 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 KCNK1O00180 336 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 RNF13O43567 381 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 ZNF780AO75290 641 aaPredicted RBP2.59□□□□□ -1.99
CD44-235ENST00000532339 OR7A10O76100 309 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 KRT6AP02538 564 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 SMIM10L1P0DMW3 83 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 TCN1P20061 433 aaPredicted RBP2.59□□□□□ -1.99
CD44-235ENST00000532339 ATP6V1B2P21281 511 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 VHLP40337 213 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 YAP1P46937 504 aaKnown RBP2.59□□□□□ -1.99
CD44-235ENST00000532339 PRRX1P54821 245 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 RAB8AP61006 207 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 HMGCS1Q01581 520 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 ZNF45Q02386 682 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 GNMTQ14749 295 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 TMED2Q15363 201 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 TAF1AQ15573 450 aaPredicted RBP2.59□□□□□ -1.99
CD44-235ENST00000532339 GABRA6Q16445 453 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 TTMPQ5BVD1 217 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 XKR7Q5GH72 579 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 CCDC122Q5T0U0 273 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 CEND1Q8N111 149 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 TMEM252Q8N6L7 170 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 ACOT4Q8N9L9 421 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 WDR31Q8NA23 367 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 C7orf33Q8WU49 177 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms