RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 OR4F4Q96R69 305 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 CITED2Q99967 270 aaPredicted RBP9.13□□□□□ -0.95
VPS28-214ENST00000531032 ZNF281Q9Y2X9 895 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 LINC00312Q9Y6C7 94 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 MINOS1-NBL1R4GNA1 71 aa9.13□□□□□ -0.95
VPS28-214ENST00000531032 IGHV2-26A0A0B4J1V2 119 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 A0A1W2PQL4 384 aaPredicted RBP9.12□□□□□ -0.95
VPS28-214ENST00000531032 hADV38S2A0JD32 116 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 FAM90A22PA8MWA6 464 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 SYT7O43581 403 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 SULT1C4O75897 302 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 OR2T7P0C7T2 308 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 AZGP1P25311 298 aaKnown RBP9.12□□□□□ -0.95
VPS28-214ENST00000531032 POLR2IP36954 125 aaKnown RBP9.12□□□□□ -0.95
VPS28-214ENST00000531032 FUT6P51993 359 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 OR12D2P58182 307 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 ACTA2P62736 377 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 BLCAPP62952 87 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 ACTG2P63267 376 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 ACTC1P68032 377 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 ACTA1P68133 377 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 DYNC1I2Q13409 638 aaKnown RBP9.12□□□□□ -0.95
VPS28-214ENST00000531032 EDDM3AQ14507 147 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 ODF4Q2M2E3 257 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 Q6ZS46 218 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 Q8IYB0 196 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 C10orf35Q96D05 121 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 NECAP2Q9NVZ3 263 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 IL36RNQ9UBH0 155 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 HILPDAQ9Y5L2 63 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 SESN1Q9Y6P5 492 aa9.12□□□□□ -0.95
VPS28-214ENST00000531032 TRBV2A0A0J9YWF9 115 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 METTL15A6NJ78 407 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 SNTNA6NMZ2 147 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 H3BSH0 61 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 F2RL2O00254 374 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 PSPNO60542 156 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 PEX14O75381 377 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 HAND1O96004 215 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 IGHA1P01876 353 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 ALDOBP05062 364 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 JUNBP17275 347 aaPredicted RBP9.11□□□□□ -0.95
VPS28-214ENST00000531032 PEX2P28328 305 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 VDAC2P45880 294 aaPredicted RBP9.11□□□□□ -0.95
VPS28-214ENST00000531032 ISL1P61371 349 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 ZNF91Q05481 1191 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 ZNF146Q15072 292 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 GRK1Q15835 563 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 TMEM95Q3KNT9 176 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 EGFL6Q8IUX8 553 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 ENTHD1Q8IYW4 607 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 ZNF676Q8N7Q3 588 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 TPRX1Q8N7U7 411 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 DNAAF1Q8NEP3 725 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 OR52N4Q8NGI2 321 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 MRAPQ8TCY5 172 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 PP6455Q8WZ26 134 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 EMG1Q92979 244 aaKnown RBP9.11□□□□□ -0.95
VPS28-214ENST00000531032 PHF21AQ96BD5 680 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 BORCS8Q96FH0 119 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 OR5M11Q96RB7 305 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 OCSTAMPQ9BR26 566 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 ADI1Q9BV57 179 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 CLEC7AQ9BXN2 247 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 CHST6Q9GZX3 395 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 TMEM133Q9H2Q1 129 aa9.11□□□□□ -0.95
VPS28-214ENST00000531032 RBFOX1Q9NWB1 397 aaKnown RBP9.11□□□□□ -0.95
VPS28-214ENST00000531032 AURKAIP1Q9NWT8 199 aaPredicted RBP9.11□□□□□ -0.95
VPS28-214ENST00000531032 LOC107986453A0A1B0GWG9 222 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 INMTO95050 263 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 SERPINA3P01011 423 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 ALPLP05186 524 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 UBCP0CG48 685 aaKnown RBP9.1□□□□□ -0.95
VPS28-214ENST00000531032 GABRR1P24046 479 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 ERP29P30040 261 aaKnown RBP9.1□□□□□ -0.95
VPS28-214ENST00000531032 NPBWR2P48146 333 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 ALDH3A2P51648 485 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 LOXL3P58215 753 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 CD83Q01151 205 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 SLC34A1Q06495 639 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 GABPB1Q06547 395 aaPredicted RBP9.1□□□□□ -0.95
VPS28-214ENST00000531032 TMED1Q13445 227 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 ZIK1Q3SY52 487 aaPredicted RBP9.1□□□□□ -0.95
VPS28-214ENST00000531032 ARSJQ5FYB0 599 aaPredicted RBP9.1□□□□□ -0.95
VPS28-214ENST00000531032 ZBTB49Q6ZSB9 765 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 C16orf82Q7Z2V1 217 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 PRSS35Q8N3Z0 413 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 CBR4Q8N4T8 237 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 OR4P4Q8NGL7 312 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 NDNFQ8TB73 568 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 SGCDQ92629 289 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 STMN2Q93045 179 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 RNF166Q96A37 237 aaPredicted RBP9.1□□□□□ -0.95
VPS28-214ENST00000531032 EME1Q96AY2 570 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 C9orf16Q9BUW7 83 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 GNG8Q9UK08 70 aa9.1□□□□□ -0.95
VPS28-214ENST00000531032 IGKV1-9A0A0C4DH69 117 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 H3BNX3 289 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 MGST3O14880 152 aa9.09□□□□□ -0.95
VPS28-214ENST00000531032 ENTPD6O75354 484 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms