RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MARCH1Q8TCQ1 289 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 DYRK2Q92630 601 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 FAHD2AQ96GK7 314 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 PAIP2BQ9ULR5 123 aaKnown RBP17.68■□□□□ 0.42
VPS28-209ENST00000528142 OSGIN2Q9Y236 505 aa17.68■□□□□ 0.42
VPS28-209ENST00000528142 IGHV2OR16-5A0A0B4J2B6 119 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 SDCBPO00560 298 aaPredicted RBP17.67■□□□□ 0.42
VPS28-209ENST00000528142 OR7C1O76099 320 aaPredicted RBP17.67■□□□□ 0.42
VPS28-209ENST00000528142 GIPP09681 153 aaPredicted RBP17.67■□□□□ 0.42
VPS28-209ENST00000528142 ZBTB25P24278 435 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 TSPAN5P62079 268 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 TIMM23BQ5SRD1 257 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 WDR86Q86TI4 376 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 RTL8AQ9BWD3 113 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 PPA2Q9H2U2 334 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 EHFQ9NZC4 300 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 ANXA10Q9UJ72 324 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 GPR132Q9UNW8 380 aa17.67■□□□□ 0.42
VPS28-209ENST00000528142 PRRG2O14669 202 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 CALCRP30988 508 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 AADACL3Q5VUY0 350 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 UNQ6126/PRO20091Q6UXV3 157 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 TMEM17Q86X19 198 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 C12orf45Q8N5I9 185 aaPredicted RBP17.66■□□□□ 0.42
VPS28-209ENST00000528142 ADAD2Q8NCV1 583 aaKnown RBP17.66■□□□□ 0.42
VPS28-209ENST00000528142 OR2T35Q8NGX2 323 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 S100PBPQ96BU1 408 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 SNRNP40Q96DI7 357 aaKnown RBP17.66■□□□□ 0.42
VPS28-209ENST00000528142 MICU1Q9BPX6 476 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 IL36RNQ9UBH0 155 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 ZNF835Q9Y2P0 537 aa17.66■□□□□ 0.42
VPS28-209ENST00000528142 INTS1Q8N201 2190 aaKnown RBP17.66■□□□□ 0.42
VPS28-209ENST00000528142 FAM172BPA6NC97 362 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 J3QT63 122 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 GRK1Q15835 563 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 MPV17LQ2QL34 196 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 PEG10Q86TG7 708 aaKnown RBP17.65■□□□□ 0.42
VPS28-209ENST00000528142 C9orf62Q8N4C0 152 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 TMEM246Q9BRR3 403 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 CHIAQ9BZP6 476 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 BCL2L14Q9BZR8 327 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 RCC2Q9P258 522 aaKnown RBP17.65■□□□□ 0.42
VPS28-209ENST00000528142 MGAT4AQ9UM21 535 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 SVILO95425 2214 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 LRP5LA4QPB2 252 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 RGS13O14921 159 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 TPD52L2O43399 206 aaKnown RBP17.65■□□□□ 0.42
VPS28-209ENST00000528142 RHBDL1O75783 438 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 DNASE1P24855 282 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 OPRM1P35372 400 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 NPY4RP50391 375 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 H2BFSP57053 126 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 PPP1R1AQ13522 171 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 TMEM211Q6ICI0 200 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 Q6ZPA2 131 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 LYG2Q86SG7 212 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 WDR89Q96FK6 387 aaPredicted RBP17.65■□□□□ 0.42
VPS28-209ENST00000528142 ZNF488Q96MN9 340 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 PLK3Q9H4B4 646 aa17.65■□□□□ 0.42
VPS28-209ENST00000528142 PURGQ9UJV8 347 aaKnown RBP17.65■□□□□ 0.42
VPS28-209ENST00000528142 A8MXE2 369 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 HLA-AP01891 365 aaKnown RBP17.64■□□□□ 0.41
VPS28-209ENST00000528142 FPR2P25090 351 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 RAP2BP61225 183 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 MPPED2Q15777 294 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 GFRALQ6UXV0 394 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 UXS1Q8NBZ7 420 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 ADAT1Q9BUB4 502 aaKnown RBP17.64■□□□□ 0.41
VPS28-209ENST00000528142 C5orf66Q9H5L9 145 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 ZNF442Q9H7R0 627 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 C12orf4Q9NQ89 552 aa17.64■□□□□ 0.41
VPS28-209ENST00000528142 C9orf170A2RU37 121 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 FAM221AA4D161 298 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 GOSR2O14653 212 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 SIX6O95475 246 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 KITLGP21583 273 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 NAAAQ02083 359 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 PRR30Q53SZ7 412 aaPredicted RBP17.63■□□□□ 0.41
VPS28-209ENST00000528142 C1orf174Q8IYL3 243 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 TMEM185AQ8NFB2 350 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 OR8G5Q8NG78 346 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 RHOFQ9HBH0 211 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 ASF1BQ9NVP2 202 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 OR5H14A6NHG9 310 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 PRKACAP17612 351 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 ARPC4P59998 168 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 DHODHQ02127 395 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 C3orf36Q3SXR2 165 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 DCAF12L2Q5VW00 463 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 MBNL2Q5VZF2 373 aaKnown RBP17.63■□□□□ 0.41
VPS28-209ENST00000528142 ZNF660Q6AZW8 331 aaPredicted RBP17.63■□□□□ 0.41
VPS28-209ENST00000528142 LINC00596Q86U02 117 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 FAM58AQ8N1B3 248 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 SCCPDHQ8NBX0 429 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 SCGB3A2Q96PL1 93 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 HSPB11Q9Y547 144 aa17.63■□□□□ 0.41
VPS28-209ENST00000528142 A0A0G2JNJ9 132 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 H0YL77 283 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 SLC22A5O76082 557 aa17.62■□□□□ 0.41
VPS28-209ENST00000528142 TAS2R31P59538 309 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms