RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 NXNL2Q5VZ03 156 aa11.41□□□□□ -0.58
CPSF1-201ENST00000526271 PLEKHG7Q6ZR37 379 aa11.41□□□□□ -0.58
CPSF1-201ENST00000526271 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.41□□□□□ -0.58
CPSF1-201ENST00000526271 MALSU1Q96EH3 234 aa11.41□□□□□ -0.58
CPSF1-201ENST00000526271 IL4I1Q96RQ9 567 aa11.41□□□□□ -0.58
CPSF1-201ENST00000526271 APOL4Q9BPW4 351 aa11.41□□□□□ -0.58
CPSF1-201ENST00000526271 OR14J1Q9UGF5 321 aa11.41□□□□□ -0.58
CPSF1-201ENST00000526271 NUFIP1Q9UHK0 495 aaKnown RBP11.41□□□□□ -0.58
CPSF1-201ENST00000526271 RAB26Q9ULW5 256 aa11.41□□□□□ -0.58
CPSF1-201ENST00000526271 TBL2Q9Y4P3 447 aaKnown RBP11.41□□□□□ -0.58
CPSF1-201ENST00000526271 DNAH7Q8WXX0 4024 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 TMEM269A0A1B0GVZ9 245 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 PRODHO43272 600 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 GNAO1P09471 354 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 CD24P25063 80 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 LGALS4P56470 323 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 COL10A1Q03692 680 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 RIPPLY1Q0D2K3 151 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 MEDAGQ5VYS4 303 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 ETV3LQ6ZN32 361 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 MEPCEQ7L2J0 689 aaKnown RBP11.4□□□□□ -0.58
CPSF1-201ENST00000526271 BCDIN3DQ7Z5W3 292 aaKnown RBP11.4□□□□□ -0.58
CPSF1-201ENST00000526271 TPRX1Q8N7U7 411 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 SETD9Q8NE22 299 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 OR5AU1Q8NGC0 362 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 OR52N4Q8NGI2 321 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 OR14K1Q8NGZ2 314 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 FBLIM1Q8WUP2 373 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 APH1BQ8WW43 257 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 HIST1H2AAQ96QV6 131 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 ZNF184Q99676 751 aaPredicted RBP11.4□□□□□ -0.58
CPSF1-201ENST00000526271 PRSS22Q9GZN4 317 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 IMPAD1Q9NX62 359 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 MTCH1Q9NZJ7 389 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 H2AFY2Q9P0M6 372 aaPredicted RBP11.4□□□□□ -0.58
CPSF1-201ENST00000526271 V9GYS6 101 aa11.4□□□□□ -0.58
CPSF1-201ENST00000526271 SLC1A7O00341 560 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 DHRS3O75911 302 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 NRASP01111 189 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 ZNF728P0DKX0 622 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 HOXD3P31249 432 aaPredicted RBP11.39□□□□□ -0.59
CPSF1-201ENST00000526271 GDNFP39905 211 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 EGFEM1PQ0D2K5 195 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 TMED1Q13445 227 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 APOFQ13790 326 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 KRT77Q7Z794 578 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 OR4P4Q8NGL7 312 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 RPS4Y2Q8TD47 263 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 ANKRD60Q9BZ19 345 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 AASSQ9UDR5 926 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 HILPDAQ9Y5L2 63 aa11.39□□□□□ -0.59
CPSF1-201ENST00000526271 ACOD1A6NK06 481 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 DENRO43583 198 aaKnown RBP11.38□□□□□ -0.59
CPSF1-201ENST00000526271 ENTPD6O75354 484 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 WBP4O75554 376 aaKnown RBP11.38□□□□□ -0.59
CPSF1-201ENST00000526271 NXPH2O95156 264 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 IGHA1P01876 353 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 ATP6V1B1P15313 513 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 CD33P20138 364 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 MYF6P23409 242 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 HTR1FP30939 366 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 VDAC2P45880 294 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-201ENST00000526271 C18orf65Q6ZTR6 163 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 GID4Q8IVV7 300 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 ZNF679Q8IYX0 411 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 C8orf59Q8N0T1 100 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-201ENST00000526271 MYDGFQ969H8 173 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 Q96MT0 163 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 YIPF3Q9GZM5 350 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 ENPP5Q9UJA9 477 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 LAMP5Q9UJQ1 280 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 SLC22A13Q9Y226 551 aa11.38□□□□□ -0.59
CPSF1-201ENST00000526271 IGHV2-26A0A0B4J1V2 119 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 PSPNO60542 156 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 RBP4P02753 201 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 ACTA2P62736 377 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 ACTG2P63267 376 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 ACTC1P68032 377 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 ACTA1P68133 377 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 UBE2V2Q15819 145 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 LAIR2Q6ISS4 152 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 DEGS2Q6QHC5 323 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 SSX6Q7RTT6 188 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 RNF144BQ7Z419 303 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 ELMOD2Q8IZ81 293 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 LINC00482Q8N8I6 264 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 RFKQ969G6 155 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 RNF166Q96A37 237 aaPredicted RBP11.37□□□□□ -0.59
CPSF1-201ENST00000526271 FOXRED1Q96CU9 486 aaPredicted RBP11.37□□□□□ -0.59
CPSF1-201ENST00000526271 CLN6Q9NWW5 311 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 WARS2Q9UGM6 360 aaKnown RBP11.37□□□□□ -0.59
CPSF1-201ENST00000526271 MRM2Q9UI43 246 aaKnown RBP11.37□□□□□ -0.59
CPSF1-201ENST00000526271 LRRC42Q9Y546 428 aa11.37□□□□□ -0.59
CPSF1-201ENST00000526271 EPPK1P58107 5090 aaKnown RBP11.36□□□□□ -0.59
CPSF1-201ENST00000526271 SNTNA6NMZ2 147 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 H3BSH0 61 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 CCL1P22362 96 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 CLVS2Q5SYC1 327 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 ZNF684Q5T5D7 378 aa11.36□□□□□ -0.59
CPSF1-201ENST00000526271 LCN1P1Q5VSP4 162 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms