RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, human

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-222	ENST00000496567	IL13RA2	Q14627	380 aa		18.18	■□□□□ 0.5
C9orf3-222	ENST00000496567	TMEM104	Q8NE00	496 aa		18.18	■□□□□ 0.5
C9orf3-222	ENST00000496567	WFDC11	Q8NEX6	87 aa		18.18	■□□□□ 0.5
C9orf3-222	ENST00000496567	FAM46B	Q96A09	425 aa		18.18	■□□□□ 0.5
C9orf3-222	ENST00000496567	NARFL	Q9H6Q4	476 aa		18.18	■□□□□ 0.5
C9orf3-222	ENST00000496567	IL36RN	Q9UBH0	155 aa		18.18	■□□□□ 0.5
C9orf3-222	ENST00000496567	MIOX	Q9UGB7	285 aa		18.18	■□□□□ 0.5
C9orf3-222	ENST00000496567	IGKV1D-17	A0A075B6S4	117 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	CEACAM18	A8MTB9	384 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	SH2D1B	O14796	132 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	TNFRSF13B	O14836	293 aa	Predicted RBP	18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	MPIG6B	O95866	241 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	USF1	P22415	310 aa	Predicted RBP	18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	SOX6	P35712	828 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	SNU13	P55769	128 aa	Known RBP	18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	RBM11	P57052	281 aa	Known RBP	18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	SCAND1	P57086	179 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	QRFP	P83859	136 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	SLC36A1	Q7Z2H8	476 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	LINC00596	Q86U02	117 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	KCTD12	Q96CX2	325 aa	Known RBP	18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	POM121	Q96HA1	1249 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	DCUN1D5	Q9BTE7	237 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	TMEM59	Q9BXS4	323 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	SELENOI	Q9C0D9	397 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	BANF2	Q9H503	90 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	ZNF665	Q9H7R5	613 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	ABRACL	Q9P1F3	81 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	KAAG1	Q9UBP8	84 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	ZNF222	Q9UK12	451 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	ADAM20	O43506	726 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	HAND1	O96004	215 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	HEXA	P06865	529 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	UNC119	Q13432	240 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	PIGY	Q3MUY2	71 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	OR10K2	Q6IF99	312 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	ZNF788	Q6ZQV5	615 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	NLRC3	Q7RTR2	1065 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	CLDND2	Q8NHS1	167 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	MED30	Q96HR3	178 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	CCL13	Q99616	98 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	REG4	Q9BYZ8	158 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	BARHL1	Q9BZE3	327 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	KCNK15	Q9H427	330 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	PATZ1	Q9HBE1	687 aa	Known RBP	18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	OR5V1	Q9UGF6	321 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567	RAB22A	Q9UL26	194 aa		18.17	■□□□□ 0.5
C9orf3-222	ENST00000496567		A0A0B4J203	849 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	IGHV4-61	A0A0C4DH41	118 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	TMEM272	A0A1B0GTI8	110 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	LDLRAD4	O15165	306 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	TMPRSS2	O15393	492 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	CHRM2	P08172	466 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	RPS2	P15880	293 aa	Known RBP	18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	DUSP1	P28562	367 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	FAM189A2	Q15884	450 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	DYNC2LI1	Q8TCX1	351 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	AP3S1	Q92572	193 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	PTX4	Q96A99	478 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	RAB39B	Q96DA2	213 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	SDSL	Q96GA7	329 aa		18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	URM1	Q9BTM9	101 aa	Known RBP	18.16	■□□□□ 0.5
C9orf3-222	ENST00000496567	SNRPB	P14678	240 aa	Known RBP	18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	ZNF182	P17025	639 aa	Predicted RBP	18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	RPS27A	P62979	156 aa	Known RBP	18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	IL13RA1	P78552	427 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	LOXL1	Q08397	574 aa	Predicted RBP	18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	MPV17L	Q2QL34	196 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	LYPD2	Q6UXB3	125 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	ZNF561	Q8N587	486 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	CD177	Q8N6Q3	437 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	NEIL1	Q96FI4	390 aa	Predicted RBP	18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567		Q96M66	194 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	ETV7	Q9Y603	341 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	VPS13C	Q709C8	3753 aa		18.15	■□□□□ 0.5
C9orf3-222	ENST00000496567	FAM90A10P	A6NDY2	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A18P	A6NE21	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A16P	A6NEW6	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A20P	A6NIJ5	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A8P	A6NJQ4	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A7P	A6NKC0	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A22P	A8MWA6	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A12P	A8MX19	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A5P	A8MXJ8	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A23P	A8MXZ1	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	RNF223	E7ERA6	249 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567		H3BUI4	141 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	GEMIN2	O14893	280 aa	Known RBP	18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	DEGS1	O15121	323 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	SIGLEC5	O15389	551 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	PAH	P00439	452 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	IGHV2-5	P01817	119 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A15P	P0C7V4	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A13P	P0C7W8	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A14P	P0C7W9	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	FAM90A24P	P0C7X0	464 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	ZNF44	P15621	663 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	AMY2B	P19961	511 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	RAB6A	P20340	208 aa		18.14	■□□□□ 0.49
C9orf3-222	ENST00000496567	CEBPD	P49716	269 aa	Predicted RBP	18.14	■□□□□ 0.49

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