RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ADA2Q9NZK5 511 aa0.78□□□□□ -2.28
VPS50-216ENST00000484954 RBM12B-AS1Q9P1G2 102 aa0.78□□□□□ -2.28
VPS50-216ENST00000484954 STX18Q9P2W9 335 aaKnown RBP0.78□□□□□ -2.28
VPS50-216ENST00000484954 PRO0628Q9UI54 55 aa0.78□□□□□ -2.28
VPS50-216ENST00000484954 ACOT9Q9Y305 439 aa0.78□□□□□ -2.28
VPS50-216ENST00000484954 PLEKHG2Q9H7P9 1386 aa0.78□□□□□ -2.28
VPS50-216ENST00000484954 BAZ1BQ9UIG0 1483 aaKnown RBP0.78□□□□□ -2.28
VPS50-216ENST00000484954 NEURL4Q96JN8 1562 aa0.78□□□□□ -2.29
VPS50-216ENST00000484954 IGHV3-43A0A0B4J1X8 118 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 TVP23AA6NH52 213 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 GGTLC3B5MD39 225 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 IGLL5B9A064 214 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 K7EPK0 472 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 ZNF593O00488 134 aaPredicted RBP0.77□□□□□ -2.29
VPS50-216ENST00000484954 PSCAO43653 123 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 OR2A4O95047 310 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 CXorf1O96002 111 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 LIPCP11150 499 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 TUFMP49411 452 aaKnown RBP0.77□□□□□ -2.29
VPS50-216ENST00000484954 PSMC5P62195 406 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 RPL10AP62906 217 aaKnown RBP0.77□□□□□ -2.29
VPS50-216ENST00000484954 MAPRE2Q15555 327 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 TMEM241Q24JQ0 296 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 DUPD1Q68J44 220 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 FAM231DQ6ZW35 169 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 CCNYL1Q8N7R7 359 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 OR6K6Q8NGW6 343 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 OR8S1Q8NH09 359 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 UBA3Q8TBC4 463 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 CCL17Q92583 94 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 CENPNQ96H22 339 aaPredicted RBP0.77□□□□□ -2.29
VPS50-216ENST00000484954 SLC25A44Q96H78 314 aaPredicted RBP0.77□□□□□ -2.29
VPS50-216ENST00000484954 PPP1R36Q96LQ0 422 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 OR2A7Q96R45 310 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 TMED9Q9BVK6 235 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 API5Q9BZZ5 524 aaKnown RBP0.77□□□□□ -2.29
VPS50-216ENST00000484954 ABCB9Q9NP78 766 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 STMN3Q9NZ72 180 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 SPATA31E1Q6ZUB1 1445 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 LAMB2P55268 1798 aa0.77□□□□□ -2.29
VPS50-216ENST00000484954 MED13Q9UHV7 2174 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 NPHP4O75161 1426 aaPredicted RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 KIF27Q86VH2 1401 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 TRGV4A0A0C4DH28 118 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 A0A0J9YYE9 177 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 A0A1B0GXF2 115 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 ANKRD20A5PA0PJZ0 165 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 ZNF729A6NN14 1252 aaPredicted RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 PRMT5O14744 637 aaPredicted RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 GYG2O15488 501 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 RNF113AO15541 343 aaKnown RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 VAPBO95292 243 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 OTCP00480 354 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 CD8AP01732 235 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 TRBC1P01850 177 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 TRGV3P03979 118 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 RHOCP08134 193 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 SNRPAP09012 282 aaKnown RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 M6PRP20645 277 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 GZMHP20718 246 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 PSMB2P49721 201 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 SLC18A1P54219 525 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 IFFO1Q0D2I5 559 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 TRDNQ13061 729 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 ELOCQ15369 112 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 HNRNPA1L2Q32P51 320 aaKnown RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 Q499Y3 187 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 SLC25A25Q6KCM7 469 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 Q6ZSA8 131 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 TPGS1Q6ZTW0 290 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 ZFP82Q8N141 532 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 CA13Q8N1Q1 262 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 SYS1Q8N2H4 156 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 ARHGAP18Q8N392 663 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 OR13C9Q8NGT0 318 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 FAM131CQ96AQ9 280 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 ADTRPQ96IZ2 230 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 QKIQ96PU8 341 aaKnown RBP eCLIP0.76□□□□□ -2.29
VPS50-216ENST00000484954 THTPAQ9BU02 230 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 MRPL20Q9BYC9 149 aaKnown RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 CLSTN2Q9H4D0 955 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 PRORYQ9H606 182 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 CHRAC1Q9NRG0 131 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 SLC7A11Q9UPY5 501 aa0.76□□□□□ -2.29
VPS50-216ENST00000484954 ZNF443Q9Y2A4 671 aaPredicted RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 ZNF706Q9Y5V0 76 aaPredicted RBP0.76□□□□□ -2.29
VPS50-216ENST00000484954 GBF1Q92538 1859 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 IGHV3-21A0A0B4J1V1 117 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 LOC389332A0A1B0GUA5 103 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 SLC5A10A0PJK1 596 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 OR2AT4A6NND4 320 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 A8MWP4 228 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 SEC14L6B5MCN3 397 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 C9JQL5 133 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 H7C2Y5 167 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 RFXANKO14593 260 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 SLC37A4O43826 429 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 IGHV3-53P01767 116 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 MBP02144 154 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 HTR2CP28335 458 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms