RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 OR2C3Q8N628 320 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ZFP62Q8NB50 900 aaPredicted RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 LIN37Q96GY3 246 aaPredicted RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 JSRP1Q96MG2 331 aaPredicted RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 GPR61Q9BZJ8 451 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 SLC2A9Q9NRM0 540 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 TGIF2-C20orf24A0A0A6YYL0 155 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 C2orf72A6NCS6 295 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 TGOLN2O43493 480 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 PITX3O75364 302 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 DHRS3O75911 302 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 SOD3P08294 240 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 KLK2P20151 261 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ATP6V0CP27449 155 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 FXYD4P59646 89 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 CCL20P78556 96 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 GAMTQ14353 236 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 KCNMB1Q16558 191 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 HAGHQ16775 308 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 SLC25A47Q6Q0C1 308 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 M1APQ8TC57 530 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 Q96M66 194 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 LRRC61Q9BV99 259 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 CHRNA10Q9GZZ6 450 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 LIME1Q9H400 295 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 NXT1Q9UKK6 140 aaKnown RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 LIPGQ9Y5X9 500 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ADAMTS9Q9P2N4 1935 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 LILRA5A6NI73 299 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ARGFXA6NJG6 315 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ZNF724A8MTY0 619 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 SLC31A2O15432 143 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 TRGC2P03986 189 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 RNF224P0DH78 156 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 FBLP22087 321 aaKnown RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 CSNK1A1P48729 337 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 EFNA3P52797 238 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 MFAP5Q13361 173 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 TMEM176BQ3YBM2 270 aaPredicted RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 PHLDA2Q53GA4 152 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 TSPO2Q5TGU0 170 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 CARD17Q5XLA6 110 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 OR2T2Q6IF00 324 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 SLC22A25Q6T423 547 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 PRSS58Q8IYP2 241 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 FBXL14Q8N1E6 418 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 CCDC71LQ8N9Z2 235 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 ADPRHL1Q8NDY3 354 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 OR5L1Q8NGL2 311 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 OR4D5Q8NGN0 318 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 MSI2Q96DH6 328 aaKnown RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 REEP6Q96HR9 211 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 COL25A1Q9BXS0 654 aaPredicted RBP11.59□□□□□ -0.55
USP40-214ENST00000483519 HSF4Q9ULV5 492 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 WSB1Q9Y6I7 421 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 V9GYS6 101 aa11.59□□□□□ -0.55
USP40-214ENST00000483519 CDRT15L2A8MXV6 281 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 B4DEV8 164 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 SCAF4O95104 1147 aaKnown RBP11.58□□□□□ -0.56
USP40-214ENST00000483519 IGLV3-1P01715 115 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 IGHV4-34P06331 123 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 FAHP16930 419 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 CCR5P51681 352 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 TAS2R60P59551 318 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 MYBPHQ13203 477 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 PDZD11Q5EBL8 140 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 ZNF506Q5JVG8 444 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 CYB561D1Q8N8Q1 229 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 RBMXL1Q96E39 390 aaKnown RBP11.58□□□□□ -0.56
USP40-214ENST00000483519 MEGF10Q96KG7 1140 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 LYZL4Q96KX0 146 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 UCK1Q9HA47 277 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 SSUH2Q9Y2M2 353 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 SIT1Q9Y3P8 196 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 A0A087X0M5 115 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 A0A0U1RQV5 110 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 A0A1B0GX30 115 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 CD63P08962 238 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 CTSSP25774 331 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 ICAM4Q14773 271 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 LBHQ53QV2 105 aaPredicted RBP11.58□□□□□ -0.56
USP40-214ENST00000483519 C1orf87Q8N0U7 546 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 OR6X1Q8NH79 312 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 PIGTQ969N2 578 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 ANGPTL4Q9BY76 406 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 SLC25A31Q9H0C2 315 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 ZNF160Q9HCG1 818 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 SDHAF3Q9NRP4 125 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 B3GALT1Q9Y5Z6 326 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 HS3ST3B1Q9Y662 390 aa11.58□□□□□ -0.56
USP40-214ENST00000483519 TDRD6O60522 2096 aaKnown RBP11.57□□□□□ -0.56
USP40-214ENST00000483519 TCRBV21S2A2A0A5A6 115 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 PHF1O43189 567 aaPredicted RBP11.57□□□□□ -0.56
USP40-214ENST00000483519 CDS2O95674 445 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 HBE1P02100 147 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 SELLP14151 372 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 FABP4P15090 132 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 ASCL1P50553 236 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 ZNF41P51814 821 aaPredicted RBP11.57□□□□□ -0.56
USP40-214ENST00000483519 SRPXP78539 464 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms