RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SMLR1H3BR10 107 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 GOLGA8RI6L899 631 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 OR7C2O60412 319 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 OR2A4O95047 310 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 LHBP01229 141 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 CECR9P0C854 216 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 LIMS3P0CW19 117 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 LIMS4P0CW20 117 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 NPY1RP25929 384 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 C1QTNF8P60827 252 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 SKP1P63208 163 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 PLA2R1Q13018 1463 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 SP6Q3SY56 376 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 TIMM23BQ5SRD1 257 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 LCE3EQ5T5B0 92 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF880Q6PDB4 577 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 TRMT10CQ7L0Y3 403 aaKnown RBP3.06□□□□□ -1.92
UPF3B-203ENST00000478840 OR5AK3PQ8NH89 298 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF420Q8TAQ5 688 aaPredicted RBP3.06□□□□□ -1.92
UPF3B-203ENST00000478840 C22orf15Q8WYQ4 148 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 RAD50Q92878 1312 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 CCDC127Q96BQ5 260 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF514Q96K75 400 aaPredicted RBP3.06□□□□□ -1.92
UPF3B-203ENST00000478840 LINC00167Q96N53 147 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 OR2A7Q96R45 310 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 HDHD2Q9H0R4 259 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 S4R3C0 116 aa3.06□□□□□ -1.92
UPF3B-203ENST00000478840 TUBGCP6Q96RT7 1819 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 SETD1AO15047 1707 aaKnown RBP3.05□□□□□ -1.92
UPF3B-203ENST00000478840 MYBPHLA2RUH7 354 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 PGPA6NDG6 321 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 C9JQL5 133 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 ITGB1BP1O14713 200 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 MAGEB4O15481 346 aaPredicted RBP3.05□□□□□ -1.92
UPF3B-203ENST00000478840 GYG2O15488 501 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 SYNGR1O43759 233 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 WISP3O95389 354 aaPredicted RBP3.05□□□□□ -1.92
UPF3B-203ENST00000478840 SNAP29O95721 258 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 IGKV5-2P06315 115 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 NTF3P20783 257 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 PSMB9P28065 219 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 MPIP34949 423 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 ATP5G2Q06055 141 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 MEF2CQ06413 473 aaPredicted RBP3.05□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF616Q08AN1 781 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 BNIP2Q12982 314 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 BTN1A1Q13410 526 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 COX19Q49B96 90 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 FAM104BQ5XKR9 115 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 GLYATQ6IB77 296 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 FAM183BPQ6ZVS7 135 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 BOD1L2Q8IYS8 172 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 RNASEH2CQ8TDP1 164 aaKnown RBP3.05□□□□□ -1.92
UPF3B-203ENST00000478840 RTN4IP1Q8WWV3 396 aaPredicted RBP3.05□□□□□ -1.92
UPF3B-203ENST00000478840 STARD4Q96DR4 205 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 FMC1Q96HJ9 113 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 IP6K3Q96PC2 410 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 APOL4Q9BPW4 351 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 MS4A8Q9BY19 250 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 WDR54Q9H977 334 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 RDH14Q9HBH5 336 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 ASCL3Q9NQ33 180 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 FBXO6Q9NRD1 293 aaPredicted RBP3.05□□□□□ -1.92
UPF3B-203ENST00000478840 SLC22A14Q9Y267 594 aa3.05□□□□□ -1.92
UPF3B-203ENST00000478840 SLIT3O75094 1523 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 NOS1P29475 1434 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 A0A1W2PRG6 482 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 CD300LBA8K4G0 201 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 LGALS9O00182 355 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 TOX3O15405 576 aaPredicted RBP3.04□□□□□ -1.92
UPF3B-203ENST00000478840 STC1P52823 247 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 CCL23P55773 120 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 PITPNAQ00169 270 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 SSX1Q16384 188 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 KLHL12Q53G59 568 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 ACTBL2Q562R1 376 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 HSP90B2PQ58FF3 399 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 ZNF678Q5SXM1 525 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 FAM162BQ5T6X4 162 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 PRSS54Q6PEW0 395 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 CLEC18BQ6UXF7 455 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 USP50Q70EL3 339 aaPredicted RBP3.04□□□□□ -1.92
UPF3B-203ENST00000478840 PDPNQ86YL7 162 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 ST20-AS1Q8NBB2 130 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 OR5H2Q8NGV7 314 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 DYNC2LI1Q8TCX1 351 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 WDR34Q96EX3 536 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 MRAP2Q96G30 205 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 GPR82Q96P67 336 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 MARVELD1Q9BSK0 173 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 POMKQ9H5K3 350 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 RHOFQ9HBH0 211 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 RBM12B-AS1Q9P1G2 102 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 FBXL3Q9UKT7 428 aa3.04□□□□□ -1.92
UPF3B-203ENST00000478840 SCN1AP35498 2009 aa3.03□□□□□ -1.92
UPF3B-203ENST00000478840 C7orf66A4D0T2 115 aa3.03□□□□□ -1.92
UPF3B-203ENST00000478840 BTNL10A8MVZ5 291 aa3.03□□□□□ -1.92
UPF3B-203ENST00000478840 UGT2B11O75310 529 aa3.03□□□□□ -1.92
UPF3B-203ENST00000478840 PDCD6O75340 191 aa3.03□□□□□ -1.92
UPF3B-203ENST00000478840 CA2P00918 260 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms