RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 BCL3P20749 454 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 PRTN3P24158 256 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 PSMB9P28065 219 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 ZNF93P35789 620 aaPredicted RBP14.67□□□□□ -0.06
COL7A1-205ENST00000465238 IL13RA1P78552 427 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 INSL4Q14641 139 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 LRRC10Q5BKY1 277 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 CD276Q5ZPR3 534 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 FIP1L1Q6UN15 594 aaKnown RBP14.67□□□□□ -0.06
COL7A1-205ENST00000465238 ZNF788Q6ZQV5 615 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 FAM216BQ8N7L0 139 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 PNLDC1Q8NA58 520 aaKnown RBP14.67□□□□□ -0.06
COL7A1-205ENST00000465238 ZSCAN4Q8NAM6 433 aaPredicted RBP14.67□□□□□ -0.06
COL7A1-205ENST00000465238 TNFAIP8L1Q8WVP5 186 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 EMG1Q92979 244 aaKnown RBP14.67□□□□□ -0.06
COL7A1-205ENST00000465238 SMURF1Q9HCE7 757 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 TCF7L1Q9HCS4 588 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 OR14J1Q9UGF5 321 aa14.67□□□□□ -0.06
COL7A1-205ENST00000465238 IGKV1D-17A0A075B6S4 117 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 F8VVB4 439 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 F8VWA3 439 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 KNG1P01042 644 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 TFF1P04155 84 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 PPIAL4GP0DN37 164 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 GABRA5P31644 462 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 PRDX2P32119 198 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 NPBWR2P48146 333 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 ZP1P60852 638 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 PAX8Q06710 450 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 IKZF1Q13422 519 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 HSD17B12Q53GQ0 312 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 CRIP3Q6Q6R5 217 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 FAM58AQ8N1B3 248 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 ST8SIA4Q92187 359 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 GAFA1Q96PS6 74 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 S100A13Q99584 98 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 FAM192AQ9GZU8 254 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 ELL3Q9HB65 397 aaPredicted RBP14.66□□□□□ -0.06
COL7A1-205ENST00000465238 RHOFQ9HBH0 211 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 ZNF222Q9UK12 451 aa14.66□□□□□ -0.06
COL7A1-205ENST00000465238 A0A087WXM4 84 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 IGKV1-12A0A0C4DH73 117 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 A0A1B0GW55 424 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 MEGF11A6BM72 1044 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DNAJC9-AS1A6NH13 148 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 GABRPO00591 440 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 SIGLEC5O15389 551 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 SC5DO75845 299 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 KDM4BO94953 1096 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 IGKV1D-12P01611 117 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4L2P0CJ85 424 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4L3P0CJ86 424 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4L4P0CJ87 422 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4L5P0CJ88 424 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4L6P0CJ89 424 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4L7P0CJ90 424 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 PRKACAP17612 351 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 PAX2Q02962 417 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4L9Q6RFH8 374 aaPredicted RBP14.65□□□□□ -0.06
COL7A1-205ENST00000465238 BTNL3Q6UXE8 466 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 BCL6BQ8N143 479 aaPredicted RBP14.65□□□□□ -0.06
COL7A1-205ENST00000465238 JAGN1Q8N5M9 183 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 PXT1Q8NFP0 134 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 TSPAN14Q8NG11 270 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 PHYHIPQ92561 330 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 SDSLQ96GA7 329 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 ZNF747Q9BV97 191 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 SLITRK2Q9H156 845 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 RBFOX1Q9NWB1 397 aaKnown RBP14.65□□□□□ -0.06
COL7A1-205ENST00000465238 DUX4Q9UBX2 424 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 GLS2Q9UI32 602 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 ING4Q9UNL4 249 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 SF3B6Q9Y3B4 125 aaKnown RBP14.65□□□□□ -0.06
COL7A1-205ENST00000465238 MEGF8Q7Z7M0 2845 aa14.65□□□□□ -0.06
COL7A1-205ENST00000465238 CCRL2O00421 344 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 GPR37O15354 613 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 ARL6IP5O75915 188 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 ECDO95905 644 aaPredicted RBP14.64□□□□□ -0.07
COL7A1-205ENST00000465238 UCHL1P09936 223 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 CALCBP10092 127 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 PTGFRP43088 359 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 OR3A4PP47883 348 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 CEBPDP49716 269 aaPredicted RBP14.64□□□□□ -0.07
COL7A1-205ENST00000465238 CAPZA1P52907 286 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 BAMBIQ13145 260 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 RSU1Q15404 277 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 SSX1Q16384 188 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 C11orf91Q3C1V1 193 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 FAM27D1Q5T7N8 215 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 TMEM91Q6ZNR0 172 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 CDH26Q8IXH8 852 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 ZNF561Q8N587 486 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 CD177Q8N6Q3 437 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 TMEM185AQ8NFB2 350 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 RAB40AQ8WXH6 277 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 NUDT16L1Q9BRJ7 211 aaKnown RBP14.64□□□□□ -0.07
COL7A1-205ENST00000465238 MS4A7Q9GZW8 240 aaPredicted RBP14.64□□□□□ -0.07
COL7A1-205ENST00000465238 HMG20AQ9NP66 347 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 NDUFB11Q9NX14 153 aa14.64□□□□□ -0.07
COL7A1-205ENST00000465238 SLC25A10Q9UBX3 287 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms