RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SMIM3Q9BZL3 60 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 CHST5Q9GZS9 411 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 PRDM13Q9H4Q3 707 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 WFDC1Q9HC57 220 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 SEPSECSQ9HD40 501 aaKnown RBP7.42□□□□□ -1.22
VPS50-208ENST00000458707 GFOD1Q9NXC2 390 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 ANXA10Q9UJ72 324 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 CYP8B1Q9UNU6 501 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 WASF3Q9UPY6 502 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 GOLT1BQ9Y3E0 138 aa7.42□□□□□ -1.22
VPS50-208ENST00000458707 LOC102725191A0A1B0GVB3 256 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 A0A1B0GX78 115 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 A0A1W2PN81 502 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 MSTNO14793 375 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 DLEU1O43261 78 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 DHRS3O75911 302 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 SERPINA2P20848 420 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 CHRNA7P36544 502 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 CDKN1BP46527 198 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 CAMLGP49069 296 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 LSM6P62312 80 aaKnown RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 ZNF616Q08AN1 781 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 IL13RA2Q14627 380 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 TGIF1Q15583 401 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 UBE2V2Q15819 145 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 C16orf47Q6ZP98 133 aaPredicted RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 LRRC18Q8N456 261 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 D2HGDHQ8N465 521 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 ZNF383Q8NA42 475 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 SLC38A9Q8NBW4 561 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 CPEB3Q8NE35 698 aaKnown RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 CCDC54Q8NEL0 328 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 NFAM1Q8NET5 270 aaPredicted RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 OR8G5Q8NG78 346 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 STT3BQ8TCJ2 826 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 LMX1AQ8TE12 382 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 FBXO17Q96EF6 278 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 C18orf12Q96KH6 178 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 Q96M66 194 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 OXGR1Q96P68 337 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 PBDC1Q9BVG4 233 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 SUCNR1Q9BXA5 334 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 EIF5A2Q9GZV4 153 aaKnown RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 PARP12Q9H0J9 701 aaKnown RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 NAA60Q9H7X0 242 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 ZNF701Q9NV72 531 aaPredicted RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 SEMA5BQ9P283 1151 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 ZDHHC8Q9ULC8 765 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 HSF4Q9ULV5 492 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 B3GALT1Q9Y5Z6 326 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 XIRP2A4UGR9 3374 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 SHANK1Q9Y566 2161 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 SHISA8B8ZZ34 492 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 K7N7A8 449 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 IFNA17P01571 189 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 DAOP14920 347 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 NQO2P16083 231 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 DTYMKP23919 212 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 PPM1FP49593 454 aaPredicted RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 ZNF41P51814 821 aaPredicted RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 PIGPP57054 158 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 RBX1P62877 108 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 CLINT1Q14677 625 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 MRPL14Q6P1L8 145 aaKnown RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 HEPN1Q6WQI6 88 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 GALNTL5Q7Z4T8 443 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 C6orf201Q7Z4U5 140 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 FAM24BQ8N5W8 94 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 OR5D18Q8NGL1 313 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 LIN37Q96GY3 246 aaPredicted RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 TGIF2Q9GZN2 237 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 LIME1Q9H400 295 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 KCNJ16Q9NPI9 418 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 CD207Q9UJ71 328 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 MRPS18CQ9Y3D5 142 aaKnown RBP7.41□□□□□ -1.22
VPS50-208ENST00000458707 HDGFL3Q9Y3E1 203 aa7.41□□□□□ -1.22
VPS50-208ENST00000458707 TNRC6BQ9UPQ9 1833 aaKnown RBP7.4□□□□□ -1.22
VPS50-208ENST00000458707 A0A1W2PPE2 198 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 A0A1W2PPQ1 181 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 C5orf63A6NC05 138 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 EPOPA6NHQ4 379 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 SHISA7A6NL88 538 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 DIRAS3O95661 229 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 SCGB1D2O95969 90 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 ARG1P05089 322 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 OR5H8P0DN80 308 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 FCGR2AP12318 317 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 HOXA5P20719 270 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 OTX1P32242 354 aaPredicted RBP7.4□□□□□ -1.23
VPS50-208ENST00000458707 PTGDSP41222 190 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 FHITP49789 147 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 RPS23P62266 143 aaKnown RBP7.4□□□□□ -1.23
VPS50-208ENST00000458707 HIST1H3AP68431 136 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 C14orf28Q4W4Y0 310 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 HIST2H3PS2Q5TEC6 136 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 LCN10Q6JVE6 187 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 ADAM5Q6NVV9 412 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 FOXL2NBQ6ZUU3 175 aa7.4□□□□□ -1.23
VPS50-208ENST00000458707 PPP1R3BQ86XI6 285 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms