RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TAL2Q16559 108 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 NDUFAF6Q330K2 333 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 HSP90AA4PQ58FG1 418 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 Q6ZQT7 251 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 LINC00596Q86U02 117 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 NELFCDQ8IXH7 590 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 CA13Q8N1Q1 262 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 C3orf22Q8N5N4 141 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 OR2K2Q8NGT1 345 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 C22orf15Q8WYQ4 148 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 CHID1Q9BWS9 393 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 TXNIPQ9H3M7 391 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 C12orf4Q9NQ89 552 aa1.64□□□□□ -2.15
USP40-209ENST00000452724 ZNF706Q9Y5V0 76 aaPredicted RBP1.64□□□□□ -2.15
USP40-209ENST00000452724 AQRO60306 1485 aaKnown RBP eCLIP1.63□□□□□ -2.15
USP40-209ENST00000452724 IGHV3-43A0A0B4J1X8 118 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 A0A1W2PPV4 95 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 MYBPHLA2RUH7 354 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 OR2AT4A6NND4 320 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 C3orf84H3BNL1 204 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 ZNF593O00488 134 aaPredicted RBP1.63□□□□□ -2.15
USP40-209ENST00000452724 COX7A2P2O60397 106 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 SNAI1O95863 264 aaPredicted RBP1.63□□□□□ -2.15
USP40-209ENST00000452724 MBP02144 154 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 RLN2P04090 185 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 LIPCP11150 499 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 MLNP12872 115 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 TAC1P20366 129 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 DYNC1I2Q13409 638 aaKnown RBP1.63□□□□□ -2.15
USP40-209ENST00000452724 TMEM241Q24JQ0 296 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 TTMPQ5BVD1 217 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 UGT2A3Q6UWM9 527 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 ZFP82Q8N141 532 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 C2orf15Q8WU43 125 aaKnown RBP1.63□□□□□ -2.15
USP40-209ENST00000452724 YPEL4Q96NS1 127 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 STACQ99469 402 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 WDR55Q9H6Y2 383 aaPredicted RBP1.63□□□□□ -2.15
USP40-209ENST00000452724 SDHAF3Q9NRP4 125 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 ANXA10Q9UJ72 324 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 FLVCR2Q9UPI3 526 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 VWA8A3KMH1 1905 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 TMEM131Q92545 1883 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 MYO16Q9Y6X6 1858 aa1.63□□□□□ -2.15
USP40-209ENST00000452724 A0A0B4J2C4 111 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 PSCAO43653 123 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 GMDSO60547 372 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 IGKV1D-33P01593 117 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 IGKV1-33P01594 117 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 FUSP35637 526 aaKnown RBP eCLIP1.62□□□□□ -2.15
USP40-209ENST00000452724 ARR3P36575 388 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 GPR4P46093 362 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 UBE2NLQ5JXB2 153 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 CLEC12AQ5QGZ9 265 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 C16orf87Q6PH81 154 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 ZNF773Q6PK81 442 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 TMPPEQ6ZT21 453 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 TCF24Q7RTU0 167 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 BPIFB6Q8NFQ5 453 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 OR4A15Q8NGL6 344 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 OR5P3Q8WZ94 311 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 SLC25A44Q96H78 314 aaPredicted RBP1.62□□□□□ -2.15
USP40-209ENST00000452724 TDRD3Q9H7E2 651 aaKnown RBP1.62□□□□□ -2.15
USP40-209ENST00000452724 CRCT1Q9UGL9 99 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 V9GYY9 64 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 DYSFO75923 2080 aa1.62□□□□□ -2.15
USP40-209ENST00000452724 SLC5A10A0PJK1 596 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 TVP23AA6NH52 213 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 A8MWP4 228 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 F5H5P2 479 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 UPK2O00526 184 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 CDS2O95674 445 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 TPBGQ13641 420 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 ZNF321PQ8N8H1 164 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 TRIB3Q96RU7 358 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 HIGD2AQ9BW72 106 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 GABARAPL1Q9H0R8 117 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 GAL3ST2Q9H3Q3 398 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 RHOFQ9HBH0 211 aa1.61□□□□□ -2.15
USP40-209ENST00000452724 ZNF443Q9Y2A4 671 aaPredicted RBP1.61□□□□□ -2.15
USP40-209ENST00000452724 PLXNB3Q9ULL4 1909 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 CD300LBA8K4G0 201 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 PRMT5O14744 637 aaPredicted RBP1.6□□□□□ -2.15
USP40-209ENST00000452724 SLC31A1O15431 190 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 GYG2O15488 501 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 KDELR3O43731 214 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 PSIP1O75475 530 aaKnown RBP1.6□□□□□ -2.15
USP40-209ENST00000452724 CTSGP08311 255 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 HTR2CP28335 458 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 PSMD8P48556 350 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 GPR176Q14439 515 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 STK38Q15208 465 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 Q499Y3 187 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 CYP4Z1Q86W10 505 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 LYPD6Q86Y78 171 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 GAPTQ8N292 157 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 ATPAF2Q8N5M1 289 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 APOBEC3DQ96AK3 386 aaPredicted RBP1.6□□□□□ -2.15
USP40-209ENST00000452724 ADTRPQ96IZ2 230 aa1.6□□□□□ -2.15
USP40-209ENST00000452724 UTP23Q9BRU9 249 aaKnown RBP1.6□□□□□ -2.15
USP40-209ENST00000452724 PRORYQ9H606 182 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms