RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 KLKB1P03952 638 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 GLI4P10075 376 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 IER3P46695 156 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 FZD5Q13467 585 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 H1FOOQ8IZA3 346 aaPredicted RBP11.86□□□□□ -0.51
USP40-208ENST00000450966 OR10S1Q8NGN2 331 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 BCL2L10Q9HD36 194 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 LOXL2Q9Y4K0 774 aa11.86□□□□□ -0.51
USP40-208ENST00000450966 SLC35E2P0CK97 266 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 WDFY1Q8IWB7 410 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 SLC25A43Q8WUT9 341 aaPredicted RBP11.85□□□□□ -0.51
USP40-208ENST00000450966 PMS2P1A4D2B8 440 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 LILRA5A6NI73 299 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 HLA-GP17693 338 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 SLC37A1P57057 533 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 RPS23P62266 143 aaKnown RBP11.85□□□□□ -0.51
USP40-208ENST00000450966 LTC4SQ16873 150 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 C1orf210Q8IVY1 113 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 AMER3Q8N944 861 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 GALNT14Q96FL9 552 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 ADTRPQ96IZ2 230 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 DOCK1Q14185 1865 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 C5orf67F2Z3F1 127 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 JMJD6Q6NYC1 403 aaPredicted RBP11.85□□□□□ -0.51
USP40-208ENST00000450966 ALG14Q96F25 216 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 MRGPRX1Q96LB2 322 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 STRCP1A6NGW2 1772 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 IGLV3-27P01718 113 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 MDKP21741 143 aaPredicted RBP11.85□□□□□ -0.51
USP40-208ENST00000450966 CLDN17P56750 224 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 ISXQ2M1V0 245 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 C9orf135Q5VTT2 229 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 SARAFQ96BY9 339 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 SPANXA1Q9NS26 97 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 TNRC6CQ9HCJ0 1690 aaKnown RBP11.85□□□□□ -0.51
USP40-208ENST00000450966 OR5B21A6NL26 309 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 NUDT3O95989 172 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 RGRP47804 291 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 RPL34P49207 117 aaKnown RBP11.85□□□□□ -0.51
USP40-208ENST00000450966 NUDT8Q8WV74 236 aa11.85□□□□□ -0.51
USP40-208ENST00000450966 LCORQ96JN0 433 aaPredicted RBP11.85□□□□□ -0.51
USP40-208ENST00000450966 TMEM272A0A1B0GTI8 110 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 HMGN4O00479 90 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 SLCO2B1O94956 709 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 BCL2P10415 239 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 CCL11P51671 97 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 METRNLQ641Q3 311 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 ZNF48Q96MX3 618 aaPredicted RBP11.84□□□□□ -0.51
USP40-208ENST00000450966 FOXQ1Q9C009 403 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 VN1R1Q9GZP7 353 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 CHST6Q9GZX3 395 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 SLC26A1Q9H2B4 701 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 ONECUT2O95948 504 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 BPIFB3P59826 476 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 INSL4Q14641 139 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 KCNE4Q8WWG9 221 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 TNFRSF14Q92956 283 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 FAM131CQ96AQ9 280 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 GINS3Q9BRX5 216 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 CACNA1SQ13698 1873 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 C11orf94C9JXX5 98 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 OR2A4O95047 310 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 PWWP2BQ6NUJ5 590 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 OR10G4Q8NGN3 311 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 OR10G9Q8NGN4 311 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 OR10G7Q8NGN6 311 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 OR6X1Q8NH79 312 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 Q96M85 177 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 OR2A7Q96R45 310 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 P2RX4Q99571 388 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 JKAMPQ9P055 326 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 SSUH2Q9Y2M2 353 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 SERINC4A6NH21 518 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 H0YIG0 161 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 LIPFP07098 398 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 SNRPCP09234 159 aaKnown RBP11.84□□□□□ -0.51
USP40-208ENST00000450966 FGF5P12034 268 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 FGF8P55075 233 aaPredicted RBP11.84□□□□□ -0.51
USP40-208ENST00000450966 MFAP5Q13361 173 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 TMEM108Q6UXF1 575 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 SLCO4C1Q6ZQN7 724 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 OR5D13Q8NGL4 314 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 GLIPR2Q9H4G4 154 aa11.84□□□□□ -0.51
USP40-208ENST00000450966 HCRTR1O43613 425 aa11.83□□□□□ -0.51
USP40-208ENST00000450966 MPLP40238 635 aa11.83□□□□□ -0.51
USP40-208ENST00000450966 Q6ZNB5 142 aa11.83□□□□□ -0.51
USP40-208ENST00000450966 TM4SF18Q96CE8 201 aa11.83□□□□□ -0.51
USP40-208ENST00000450966 PCGF1Q9BSM1 259 aa11.83□□□□□ -0.51
USP40-208ENST00000450966 NAA60Q9H7X0 242 aa11.83□□□□□ -0.51
USP40-208ENST00000450966 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.83□□□□□ -0.51
USP40-208ENST00000450966 CDKN2AP42771 156 aaKnown RBP11.83□□□□□ -0.52
USP40-208ENST00000450966 SLC38A11Q08AI6 406 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 SLC25A30Q5SVS4 291 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 WDR25Q64LD2 544 aaPredicted RBP11.83□□□□□ -0.52
USP40-208ENST00000450966 LRRC18Q8N456 261 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 TMEM208Q9BTX3 173 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 ABCA3Q99758 1704 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 PTGER1P34995 402 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 RUNX2Q13950 521 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 LINC00696Q6ZRV3 163 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms