RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SLC25A28Q96A46 364 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 ZNF488Q96MN9 340 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 NKX3-1Q99801 234 aaPredicted RBP8.5□□□□□ -1.05
CD44-207ENST00000425428 ZNF665Q9H7R5 613 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 PLEKHJ1Q9NW61 149 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 RHBDL2Q9NX52 303 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 PTTG2Q9NZH5 202 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 MIOXQ9UGB7 285 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 OR5V1Q9UGF6 321 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 SPG11Q96JI7 2443 aa8.5□□□□□ -1.05
CD44-207ENST00000425428 TMEM14DPA8MWL7 114 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 MCRIP1C9JLW8 97 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 HAND1O96004 215 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 PAHP00439 452 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 IGHV4-39P01824 125 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 RPS27AP62979 156 aaKnown RBP8.49□□□□□ -1.05
CD44-207ENST00000425428 LRRC10Q5BKY1 277 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 NHLRC3Q5JS37 347 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 SPANXN2Q5MJ10 180 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 SHEQ5VZ18 495 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 BAIAP2L2Q6UXY1 529 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 DCDC5Q6ZRR9 648 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 C1QL2Q7Z5L3 287 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 NR2C2APQ86WQ0 139 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 ZNF561Q8N587 486 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 ASCC1Q8N9N2 400 aaKnown RBP8.49□□□□□ -1.05
CD44-207ENST00000425428 YIPF5Q969M3 257 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 RAB39BQ96DA2 213 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 BARHL1Q9BZE3 327 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 LRBAP50851 2863 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 DOCK11Q5JSL3 2073 aa8.49□□□□□ -1.05
CD44-207ENST00000425428 IGKV1-12A0A0C4DH73 117 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 RFPL4AA6NLU0 287 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 RFPL4AL1F8VTS6 287 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 LYNX1G3V0Z9 82 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 H7C1Q1 480 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 TMPRSS2O15393 492 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 NDUFB3O43676 98 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 CLPXO76031 633 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 LY6HO94772 140 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 IGKV1D-12P01611 117 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 LYNX1P0DP58 116 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 SLC25A16P16260 332 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 FUT3P21217 361 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 BLVRBP30043 206 aaPredicted RBP8.48□□□□□ -1.05
CD44-207ENST00000425428 PRDX2P32119 198 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 PMELP40967 661 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 VEGFCP49767 419 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 KRTAP10-9P60411 292 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 ERVK11-1P61568 191 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 IL13RA1P78552 427 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 PITPNAQ00169 270 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 ZNF146Q15072 292 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 TAF9Q16594 264 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 CLEC12BQ2HXU8 276 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 TMEM155Q4W5P6 130 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 PAN3Q58A45 887 aaKnown RBP8.48□□□□□ -1.05
CD44-207ENST00000425428 SPRNQ5BIV9 151 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 TMEM69Q5SWH9 247 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 FOXB2Q5VYV0 432 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 TEX36Q5VZQ5 186 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 PRSS57Q6UWY2 283 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 Q6ZTK2 550 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 LYPD6Q86Y78 171 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 ZNF525Q8N782 197 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 Q8NFD4 153 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 OR8B3Q8NGG8 313 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 IGFBPL1Q8WX77 278 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 RAB3CQ96E17 227 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 DIRAS2Q96HU8 199 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 OR8B2Q96RD0 313 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 HES4Q9HCC6 221 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 CACNG2Q9Y698 323 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 CRYBG3Q68DQ2 2970 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 CENPEQ02224 2701 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 HRNRQ86YZ3 2850 aaPredicted RBP8.48□□□□□ -1.05
CD44-207ENST00000425428 IGHV3OR15-7A0A075B7D8 119 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 A0A0B4J203 849 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 WNT9BO14905 357 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 ADAM20O43506 726 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 HPGDSO60760 199 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 NDUFS7O75251 213 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 ZNF205O95201 554 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 GYPAP02724 150 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 GLAP06280 429 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 PSG2P11465 335 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 RPS2P15880 293 aaKnown RBP8.48□□□□□ -1.05
CD44-207ENST00000425428 GIFP27352 417 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 KCNJ3P48549 501 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 PIGYQ3MUY2 71 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 NKAPLQ5M9Q1 402 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 AVPI1Q5T686 147 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 OR10K2Q6IF99 312 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 GDPD3Q7L5L3 318 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 OR5T2Q8NGG2 359 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 OR10R2Q8NGX6 335 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 Q96M66 194 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 TM2D1Q9BX74 207 aa8.48□□□□□ -1.05
CD44-207ENST00000425428 SLIRPQ9GZT3 109 aaKnown RBP8.48□□□□□ -1.05
CD44-207ENST00000425428 WDR13Q9H1Z4 485 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms