RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 METTL26Q96S19 204 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ATG101Q9BSB4 218 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 C11orf54Q9H0W9 315 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF665Q9H7R5 613 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 B9D1Q9UPM9 204 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CHST2Q9Y4C5 530 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 GLI4P10075 376 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CD80P33681 288 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ADIPOQQ15848 244 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 MAGT1Q9H0U3 335 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SLC25A19Q9HC21 320 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SLC2A9Q9NRM0 540 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CLN8Q9UBY8 286 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PCOLCE2Q9UKZ9 415 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CTSLP07711 333 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SRSF9Q13242 221 aaKnown RBP eCLIP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 WDR74Q6RFH5 385 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 OR5H6Q8NGV6 325 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 OR10J6PQ8NGY7 276 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 MARCH1Q8TCQ1 289 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PTPMT1Q8WUK0 201 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 NAA60Q9H7X0 242 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CLEC2DQ9UHP7 191 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 AKAP6Q13023 2319 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 JUNBP17275 347 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SLC38A11Q08AI6 406 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SKP2Q13309 424 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CIRBPQ14011 172 aaKnown RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 AGERQ15109 404 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF343Q6P1L6 599 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF793Q6ZN11 406 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ETV3LQ6ZN32 361 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ANKRD37Q7Z713 158 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 C20orf196Q8IYI0 205 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SHISA5Q8N114 240 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF561Q8N587 486 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 TCTEX1D1Q8N7M0 179 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZDHHC22Q8N966 263 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PTP4A1Q93096 173 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ASCL3Q9NQ33 180 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF629Q9UEG4 869 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 TNRC6CQ9HCJ0 1690 aaKnown RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 SBF1O95248 1867 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 A0A1B0GUH1 482 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 KIAA1324LA8MWY0 1029 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 MEOX2P50222 304 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 MLF1P58340 268 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 ROM1Q03395 351 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 CDC20Q12834 499 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 C10orf35Q96D05 121 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 BCL2L10Q9HD36 194 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PARD6AQ9NPB6 346 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 TECRQ9NZ01 308 aaKnown RBP6.12□□□□□ -1.43
SCN1A-204ENST00000423058 PITPNC1Q9UKF7 332 aa6.12□□□□□ -1.43
SCN1A-204ENST00000423058 C16orf97H3BN30 126 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PPP6CO00743 305 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PF4P02776 101 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PMCHP20382 165 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 KRTCAP3Q53RY4 240 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 FHL5Q5TD97 284 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 SNRNP40Q96DI7 357 aaKnown RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 SGK494Q96LW2 274 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 SLC25A33Q9BSK2 321 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 LRP12Q9Y561 859 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM238LA0A1B0GVL6 79 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 CBY3A6NI87 242 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 A6NJY4 79 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 GP1BAP07359 652 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 GABRG2P18507 467 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 EPHA8P29322 1005 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 SLC25A1P53007 311 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PCBP3P57721 371 aaKnown RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 CD81P60033 236 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PPP2CBP62714 309 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 FCN2Q15485 313 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 KISS1Q15726 138 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 TM4SF20Q53R12 229 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 OR2T2Q6IF00 324 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 UQCC3Q6UW78 93 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 CALHM1Q8IU99 346 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 SLC7A5P1Q8MH63 180 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 DDB2Q92466 427 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 MOGAT1Q96PD6 335 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 FIZ1Q96SL8 496 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 SLC22A13Q9Y226 551 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PTHLHP12272 177 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 HMGA1P17096 107 aaKnown RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PPOXP50336 477 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PRR14Q9BWN1 585 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 MMP24Q9Y5R2 645 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 DIDO1Q9BTC0 2240 aaKnown RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 OR2A25A4D2G3 310 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM210A6NLX4 147 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 DEFB108AA8MXU0 73 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 M0R143 59 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 SOCS7O14512 581 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 HINT1P49773 126 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM196Q5HYL7 178 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 OR1N2Q8NGR9 330 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF707Q96C28 371 aaPredicted RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms