RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 BCL7BQ9BQE9 202 aa5.29□□□□□ -1.56
USP40-202ENST00000409945 TSSK6Q9BXA6 273 aa5.29□□□□□ -1.56
USP40-202ENST00000409945 DGCR6LQ9BY27 220 aa5.29□□□□□ -1.56
USP40-202ENST00000409945 MRPL37Q9BZE1 423 aaKnown RBP5.29□□□□□ -1.56
USP40-202ENST00000409945 SP140LQ9H930 580 aa5.29□□□□□ -1.56
USP40-202ENST00000409945 RPRD1BQ9NQG5 326 aaKnown RBP5.29□□□□□ -1.56
USP40-202ENST00000409945 IL20Q9NYY1 176 aa5.29□□□□□ -1.56
USP40-202ENST00000409945 UGT2A1Q9Y4X1 527 aa5.29□□□□□ -1.56
USP40-202ENST00000409945 MTORP42345 2549 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 IGLV5-45A0A087WSX0 123 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 A0A1B0GUV1 79 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 C15orf62A8K5M9 175 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 E9PQ18 207 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 H3BMQ9 156 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 TIMM8AO60220 97 aaPredicted RBP5.28□□□□□ -1.56
USP40-202ENST00000409945 GPRIN2O60269 458 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 LY6G6DO95868 133 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 TSHBP01222 138 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 APOC1P02654 83 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 HMGN1P05114 100 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 CCL2P13500 99 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 ZNF250P15622 560 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 HIST1H1CP16403 213 aaKnown RBP5.28□□□□□ -1.56
USP40-202ENST00000409945 SELEP16581 610 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 HNF1AP20823 631 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 FMO3P31513 532 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 CAPZA1P52907 286 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 PPP1CBP62140 327 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 MRPS11P82912 194 aaKnown RBP5.28□□□□□ -1.56
USP40-202ENST00000409945 LOXL1Q08397 574 aaPredicted RBP5.28□□□□□ -1.56
USP40-202ENST00000409945 GGTLC2Q14390 218 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 TAF13Q15543 124 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 GPR107Q5VW38 600 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 CYB5R2Q6BCY4 276 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 XAF1Q6GPH4 301 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 SLC25A24Q6NUK1 477 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 ZNF774Q6NX45 483 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 SLC27A4Q6P1M0 643 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 C9orf139Q6ZV77 190 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 ZNF584Q8IVC4 421 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 WDFY1Q8IWB7 410 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 PARP8Q8N3A8 854 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 SDR9C7Q8NEX9 313 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 OR9Q2Q8NGE9 314 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 OR13A1Q8NGR1 328 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 OR1F12Q8NHA8 337 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 C10orf105Q8TEF2 133 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 RDH5Q92781 318 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 C12orf43Q96C57 262 aaKnown RBP5.28□□□□□ -1.56
USP40-202ENST00000409945 POM121L2Q96KW2 1035 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 ZNF75AQ96N20 296 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 NMNAT3Q96T66 252 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 TPK1Q9H3S4 243 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 EGLN3Q9H6Z9 239 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 Q9H8V8 135 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 B9D1Q9UPM9 204 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 NOP16Q9Y3C1 178 aaKnown RBP5.28□□□□□ -1.56
USP40-202ENST00000409945 ACANP16112 2415 aa5.28□□□□□ -1.56
USP40-202ENST00000409945 C2CD3Q4AC94 2353 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 HIVEP2P31629 2446 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 IGHV4-30-2A0A087WSY4 118 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 IGKV1D-43A0A0B4J1Z2 117 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 A0A1W2PPI3 338 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 ST8SIA3O43173 380 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 IGHV3-13P01766 116 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 POLR2IP36954 125 aaKnown RBP5.27□□□□□ -1.57
USP40-202ENST00000409945 ALDH3B1P43353 468 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 TMEM33P57088 247 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 SLC35A2P78381 396 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 ENDOGQ14249 297 aaKnown RBP5.27□□□□□ -1.57
USP40-202ENST00000409945 MAD2L1BPQ15013 274 aaPredicted RBP5.27□□□□□ -1.57
USP40-202ENST00000409945 HFEQ30201 348 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 ELFN2Q5R3F8 820 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 RTN4RL2Q86UN3 420 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 MAPKAPK5-AS1Q8N8E1 139 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 POC1AQ8NBT0 407 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 BPIFB6Q8NFQ5 453 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 CNIH3Q8TBE1 160 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 SETD6Q8TBK2 473 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 FCAMRQ8WWV6 532 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 APOBEC3DQ96AK3 386 aaPredicted RBP5.27□□□□□ -1.57
USP40-202ENST00000409945 MOB3AQ96BX8 217 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 COQ7Q99807 217 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 HCAR1Q9BXC0 346 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 DUSP21Q9H596 190 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 TMEM165Q9HC07 324 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 FZR1Q9UM11 496 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 IGLV3-9A0A075B6K5 115 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 CD5LO43866 347 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 MPZL2O60487 215 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 HTR1AP08908 422 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 GGT2P36268 569 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 GPR6P46095 362 aaPredicted RBP5.27□□□□□ -1.57
USP40-202ENST00000409945 BMXP51813 675 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 SCGB2A2Q13296 93 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 AARDQ4LEZ3 155 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 LAIR2Q6ISS4 152 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 FAM166AQ6J272 317 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 DNM1P46Q6ZS02 220 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 PRSS48Q7RTY5 328 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms