RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 POFUT1Q9H488 388 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 RGCCQ9H4X1 137 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 PIPOXQ9P0Z9 390 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 ELF5Q9UKW6 265 aaPredicted RBP11.46□□□□□ -0.58
LIMS1-204ENST00000409441 A0A0A6YYD4 124 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 G3V3Q6 166 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 CRTAPO75718 401 aaPredicted RBP11.45□□□□□ -0.58
LIMS1-204ENST00000409441 RGS11O94810 467 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 HIST1H1DP16402 221 aaKnown RBP11.45□□□□□ -0.58
LIMS1-204ENST00000409441 FAHP16930 419 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 PTGFRP43088 359 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 RPS23P62266 143 aaKnown RBP11.45□□□□□ -0.58
LIMS1-204ENST00000409441 RPS27AP62979 156 aaKnown RBP11.45□□□□□ -0.58
LIMS1-204ENST00000409441 ZNF92Q03936 586 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 GK2Q14410 553 aaPredicted RBP11.45□□□□□ -0.58
LIMS1-204ENST00000409441 HLXQ14774 488 aaPredicted RBP11.45□□□□□ -0.58
LIMS1-204ENST00000409441 UBE2V2Q15819 145 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 MSMPQ1L6U9 139 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 ZNF718Q3SXZ3 478 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 TMEM104Q8NE00 496 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 OR2AK2Q8NG84 335 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 OR2AE1Q8NHA4 323 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 KLF14Q8TD94 323 aaPredicted RBP11.45□□□□□ -0.58
LIMS1-204ENST00000409441 DHRS9Q9BPW9 319 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 TM2D1Q9BX74 207 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 ZNF442Q9H7R0 627 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 DUSP13Q9UII6 198 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 FZR1Q9UM11 496 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 ROS1P08922 2347 aa11.45□□□□□ -0.58
LIMS1-204ENST00000409441 H3BUI4 141 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 MFNGO00587 321 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 CA11O75493 328 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 OR4A8P0C604 315 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 ZNF250P15622 560 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 GNB3P16520 340 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 PRKACBP22694 351 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 GCH1P30793 250 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 APOBEC3AP31941 199 aaPredicted RBP11.44□□□□□ -0.58
LIMS1-204ENST00000409441 SERPINF1P36955 418 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 CNN3Q15417 329 aaKnown RBP11.44□□□□□ -0.58
LIMS1-204ENST00000409441 ADIPOQQ15848 244 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 C4orf46Q504U0 113 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 ZNF787Q6DD87 383 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 CRIP3Q6Q6R5 217 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 RNF144BQ7Z419 303 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 TMEM200AQ86VY9 491 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 OR52B4Q8NGK2 314 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 OR13C8Q8NGS7 320 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 NUDCD2Q8WVJ2 157 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 REEP6Q96HR9 211 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 S100A13Q99584 98 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 SLC6A7Q99884 636 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 NICN1Q9BSH3 213 aa11.44□□□□□ -0.58
LIMS1-204ENST00000409441 REPIN1Q9BWE0 567 aaKnown RBP11.44□□□□□ -0.58
LIMS1-204ENST00000409441 HS3ST1O14792 307 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 XRCC2O43543 280 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 SSX5O60225 188 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 FCER2P06734 321 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 OR4E1P0C645 316 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 SSTR2P30874 369 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 MPV17P39210 176 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 PSG7Q13046 419 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 LGALSLQ3ZCW2 172 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-204ENST00000409441 ATPAF1Q5TC12 328 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-204ENST00000409441 MBNL2Q5VZF2 373 aaKnown RBP11.43□□□□□ -0.58
LIMS1-204ENST00000409441 FBXW12Q6X9E4 464 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 LRP11Q86VZ4 500 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 MUC20Q8N307 709 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-204ENST00000409441 TNFAIP8L1Q8WVP5 186 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 FBXW5Q969U6 566 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 MRPL24Q96A35 216 aaKnown RBP11.43□□□□□ -0.58
LIMS1-204ENST00000409441 SPSB4Q96A44 273 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 OCSTAMPQ9BR26 566 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 CHIAQ9BZP6 476 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 PLEKHF2Q9H8W4 249 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 KCNK7Q9Y2U2 307 aa11.43□□□□□ -0.58
LIMS1-204ENST00000409441 FOXI3A8MTJ6 420 aaPredicted RBP11.42□□□□□ -0.58
LIMS1-204ENST00000409441 F5H5P2 479 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SOCS1O15524 211 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 RAC2P15153 192 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 TMEM50BP56557 158 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 PRSS12P56730 875 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SELENOVP59797 346 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 TSPAN5P62079 268 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SLC22A6Q4U2R8 563 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 PLAC9Q5JTB6 97 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 VAX1Q5SQQ9 334 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 ZBTB37Q5TC79 503 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 FAHD2BQ6P2I3 314 aaPredicted RBP11.42□□□□□ -0.58
LIMS1-204ENST00000409441 MRPL21Q7Z2W9 205 aaKnown RBP11.42□□□□□ -0.58
LIMS1-204ENST00000409441 C12orf45Q8N5I9 185 aaPredicted RBP11.42□□□□□ -0.58
LIMS1-204ENST00000409441 UXS1Q8NBZ7 420 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 OR4S1Q8NGB4 309 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 OR51T1Q8NGJ9 327 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SNAPC3Q92966 411 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 FAHD2AQ96GK7 314 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 TECTBQ96PL2 329 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SYT3Q9BQG1 590 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 MRPL37Q9BZE1 423 aaKnown RBP11.42□□□□□ -0.58
LIMS1-204ENST00000409441 PLK3Q9H4B4 646 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms