RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HOXA1P49639 335 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-205ENST00000392004 ATP5J2P56134 94 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF92Q03936 586 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 FAM74A3Q4VXF1 159 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 TMEM255AQ5JRV8 349 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 NSUN5P2Q63ZY6 315 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF546Q86UE3 836 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 TPRX1Q8N7U7 411 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 FAM3DQ96BQ1 224 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 USB1Q9BQ65 265 aaKnown RBP8.94□□□□□ -0.98
COL6A3-205ENST00000392004 SOX7Q9BT81 388 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-205ENST00000392004 DNASE2O00115 360 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-205ENST00000392004 KLF4O43474 513 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 CALCRP30988 508 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 GFRA1P56159 465 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 BPIFB2Q8N4F0 458 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 OR1K1Q8NGR3 316 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 LRRC29Q8WV35 223 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 THRSPQ92748 146 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 SPRY4Q9C004 299 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 ZCCHC4Q9H5U6 513 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 GSKIPQ9P0R6 139 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 AKAP13Q12802 2813 aa8.94□□□□□ -0.98
COL6A3-205ENST00000392004 BOD1L1Q8NFC6 3051 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 DMXL1Q9Y485 3027 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 A0A0D9SG52 128 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF816-ZNF321PA0A0X1KG74 233 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 C13orf42A0A1B0GVH6 325 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 OGG1O15527 345 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 DNPH1O43598 174 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 SCGB1D2O95969 90 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 CDK2P24941 298 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 KIR2DL2P43627 348 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 PTH2RP49190 550 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 UCP2P55851 309 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 UBE2MP61081 183 aaKnown RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 EGR3Q06889 387 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ATXN7L3Q14CW9 347 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 PLGLAQ15195 96 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 FAM201AQ5SY85 155 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 FAM27BQ5VT28 67 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF660Q6AZW8 331 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 EIF4E3Q8N5X7 224 aaKnown RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 FGFBP3Q8TAT2 258 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 WBP1Q96G27 269 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 MNTQ99583 582 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 B3GAT1Q9P2W7 334 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ST6GALNAC2Q9UJ37 374 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 LHFPL6Q9Y693 200 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 PNPP00491 289 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 IGF2P01344 180 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 CECR9P0C854 216 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 GRNP28799 593 aaKnown RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 PRSS3P35030 304 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 PLAURQ03405 335 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 HES1Q14469 280 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 SWI5Q1ZZU3 235 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 SNAI3Q3KNW1 292 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 SYS1Q8N2H4 156 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 LILRB2Q8N423 598 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 BPIFCQ8NFQ6 507 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 OR52N4Q8NGI2 321 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 PURGQ9UJV8 347 aaKnown RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ST3GAL6Q9Y274 331 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 WRBO00258 174 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ADAM10O14672 748 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 RLN2P04090 185 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 AMY2AP04746 511 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 CSF1P09603 554 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 GNRHRP30968 328 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 TAS2R20P59543 309 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 STAC2Q6ZMT1 411 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 SVBPQ8N300 66 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF808Q8N4W9 903 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 OR4K15Q8NH41 348 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 FRRS1LQ9P0K9 344 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 FOXJ3Q9UPW0 622 aa8.93□□□□□ -0.98
COL6A3-205ENST00000392004 ZNF106Q9H2Y7 1883 aaKnown RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 TP53BP1Q12888 1972 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 PRRC2AP48634 2157 aaKnown RBP8.93□□□□□ -0.98
COL6A3-205ENST00000392004 TMEM235A6NFC5 223 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 MPTX1A8MV57 137 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 ADAM20O43506 726 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 AKR1C4P17516 323 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 ACHEP22303 614 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 S100A12P80511 92 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 PRB3Q04118 309 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-205ENST00000392004 RNASE10Q5GAN6 216 aaKnown RBP8.92□□□□□ -0.98
COL6A3-205ENST00000392004 FAM74A1Q5RGS3 127 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 RAB12Q6IQ22 244 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 OR6S1Q8NH40 331 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 RAB3CQ96E17 227 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 RNF115Q9Y4L5 304 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 PCNX3Q9H6A9 2034 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 E9PLN8 166 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 SIGLEC5O15389 551 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 MGMTP16455 207 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 GSK3AP49840 483 aa8.92□□□□□ -0.98
COL6A3-205ENST00000392004 LGALS4P56470 323 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms