RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MPC1Q9Y5U8 109 aa11.38□□□□□ -0.59
CCDC88C-204ENST00000389857 SOX15O60248 233 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 OR5AC1P0C628 307 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 SRD5A2P31213 254 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 SPINK9Q5DT21 86 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 LRP11Q86VZ4 500 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 OR10D4PQ8NGN7 298 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 DNAJB12Q9NXW2 375 aaKnown RBP11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 SLX4Q8IY92 1834 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 LYZL6O75951 148 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 PRICKLE4Q2TBC4 344 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 OIT3Q8WWZ8 545 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 ZNF426Q9BUY5 554 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 ZFP64Q9NPA5 681 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 TRDCB7Z8K6 153 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 CTAG2O75638 210 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 UBE2L3P68036 154 aaKnown RBP11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 PDCD1Q15116 288 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 TCTN1Q2MV58 587 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 CCDC190Q86UF4 302 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 TP53I13Q8NBR0 393 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 MRGPRDQ8TDS7 321 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 PHYHIPLQ96FC7 376 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 NAT8Q9UHE5 227 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 ELOBQ15370 118 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 C6orf201Q7Z4U5 140 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 TRIP11Q15643 1979 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 IGHV3-43A0A0B4J1X8 118 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 IGHV3-43DP0DP04 118 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 IL24Q13007 206 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 SCGB1D4Q6XE38 83 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 OR1L3Q8NH93 324 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 DYNLRB2Q8TF09 96 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 TSPAN32Q96QS1 320 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 HELTA6NFD8 242 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 PLPP3O14495 311 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 HLA-GP17693 338 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 MPLP40238 635 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 PAFAH1B2P68402 229 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 OR2C3Q8N628 320 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 FAM210BQ96KR6 192 aa11.37□□□□□ -0.59
CCDC88C-204ENST00000389857 C3orf80F5H4A9 247 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 HOXC4P09017 264 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 HIST1H1EP10412 219 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 ZXDAP98168 799 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 PPP1R1AQ13522 171 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 RTP5Q14D33 572 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 COX19Q49B96 90 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 MRM1Q6IN84 353 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 PRDM7Q9NQW5 492 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 MTFP1Q9UDX5 166 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 HSPB8Q9UJY1 196 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 DDX60LQ5H9U9 1706 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 GNG7O60262 68 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 CST2P09228 141 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 SPNP16150 400 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 DYNLT3P51808 116 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 FMODQ06828 376 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 DHRS2Q13268 280 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 ANKRD55Q3KP44 614 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 SLC35E4Q6ICL7 350 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 NXF2Q9GZY0 626 aaKnown RBP11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 Q9N2K0 584 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 ZMIZ1Q9ULJ6 1067 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 H3BMH7 237 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 SPEM2Q0P670 501 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 IZUMO4Q1ZYL8 232 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 FAM78BQ5VT40 261 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 RFESDQ8TAC1 157 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 ZNF275Q9NSD4 429 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 PNRC1Q12796 327 aaPredicted RBP11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 TMPRSS2O15393 492 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 DUSP18Q8NEJ0 188 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 DEFB124Q8NES8 71 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 UBALD1Q8TB05 177 aa11.36□□□□□ -0.59
CCDC88C-204ENST00000389857 ID1P41134 155 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 CAMPP49913 170 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 KHDC3LQ587J8 217 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 Q6ZN92 141 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 TMEM191AQ9H0A3 160 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 KCNE1BA0A087WTH5 132 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 P01737 135 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 FGF9P31371 208 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 RAG2P55895 527 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 BCL7CQ8WUZ0 217 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 R3HDM4Q96D70 268 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 UBTD1Q9HAC8 227 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 STARD10Q9Y365 291 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 GSTZ1O43708 216 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 OPN1MWP04001 364 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 OPN1MW2P0DN77 364 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 OPN1MW3P0DN78 364 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 ZNF547Q8IVP9 402 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 C10orf35Q96D05 121 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 ATG101Q9BSB4 218 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 SIAH2O43255 324 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 RAE1P78406 368 aaKnown RBP11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 ASB10Q8WXI3 467 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 CCR2P41597 374 aa11.35□□□□□ -0.59
CCDC88C-204ENST00000389857 ACAA2P42765 397 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms