RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CD8AP01732 235 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 S100A11P31949 105 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 ASCL1P50553 236 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 LY6DQ14210 128 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 MBNL2Q5VZF2 373 aaKnown RBP15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 LYG2Q86SG7 212 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 ZNF611Q8N823 705 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 TMEM104Q8NE00 496 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 OR51F2Q8NH61 342 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 CHST6Q9GZX3 395 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 BANF2Q9H503 90 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 ZMAT3Q9HA38 289 aaKnown RBP15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 KIF25Q9UIL4 384 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 OSGIN2Q9Y236 505 aa15.58■□□□□ 0.09
CCDC88C-203ENST00000389856 CHD8Q9HCK8 2581 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 IGKV1-27A0A075B6S5 117 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 RFPL4AA6NLU0 287 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 CEACAM18A8MTB9 384 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 RFPL4AL1F8VTS6 287 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 CCL21O00585 134 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 SSX5O60225 188 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 FCER2P06734 321 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 RPA2P15927 270 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 GNB3P16520 340 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 CXCL2P19875 107 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 KITLGP21583 273 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 CD34P28906 385 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 SSTR2P30874 369 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 CHRNB4P30926 498 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 GPM6AP51674 278 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 DHRS2Q13268 280 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 SCGB2B2Q4G0G5 96 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 DMRTC1Q5HYR2 192 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM65Q6PI78 240 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 CRIP3Q6Q6R5 217 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM108Q6UXF1 575 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 RNF144BQ7Z419 303 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 TMED4Q7Z7H5 227 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM200AQ86VY9 491 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 SPERTQ8NA61 448 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 OR5M8Q8NGP6 311 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 NUDCD2Q8WVJ2 157 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 GSX2Q9BZM3 304 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 PKIBQ9C010 78 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 RHOFQ9HBH0 211 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 KCNK7Q9Y2U2 307 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 MYO7BQ6PIF6 2116 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 SPRY1O43609 319 aaPredicted RBP15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 ZBTB25P24278 435 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 RGS7BPQ6MZT1 257 aaPredicted RBP15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 C1QL2Q7Z5L3 287 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 OSR2Q8N2R0 312 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 OR4K15Q8NH41 348 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 HPSE2Q8WWQ2 592 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM100Q9NV29 134 aa15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 PURGQ9UJV8 347 aaKnown RBP15.57■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM210A6NLX4 147 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 SERPINE3A8MV23 424 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 LEUTXA8MZ59 168 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 MFNGO00587 321 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 TPD52L2O43399 206 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 TIMM8AO60220 97 aaPredicted RBP15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 RP2O75695 350 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 B3GALNT1O75752 331 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 PLATP00750 562 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 CA6P23280 308 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 PTAFRP25105 342 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 CALCRP30988 508 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 HAAOP46952 286 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 SELENOVP59797 346 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 PSG7Q13046 419 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 ALKBH2Q6NS38 261 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 SLC25A26Q70HW3 274 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 TMUB2Q71RG4 321 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 TMEM17Q86X19 198 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 OR8G5Q8NG78 346 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 OR4S1Q8NGB4 309 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 MITD1Q8WV92 249 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 ADAT1Q9BUB4 502 aaKnown RBP15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 PLK3Q9H4B4 646 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 VSIG4Q9Y279 399 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 SPTA1P02549 2419 aa15.56■□□□□ 0.08
CCDC88C-203ENST00000389856 A0A0A6YYD4 124 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 RPS10-NUDT3A0A1W2PQS6 291 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 LRP5LA4QPB2 252 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 TRAPPC2LH3BP13 241 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 ANGPTL7O43827 346 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 HRH1P35367 487 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 GLRXP35754 106 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 TAS2R46P59540 309 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 OR8G1Q15617 311 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 C2orf68Q2NKX9 166 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 HOGA1Q86XE5 327 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 OR10K1Q8NGX5 313 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 Q96M66 194 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 PHB2Q99623 299 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 POLDIP2Q9Y2S7 368 aa15.55■□□□□ 0.08
CCDC88C-203ENST00000389856 A0A0D9SG52 128 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A10PA6NDY2 464 aa15.54■□□□□ 0.08
CCDC88C-203ENST00000389856 FAM90A18PA6NE21 464 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms