RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ESRP2Q9H6T0 727 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 ALPK2Q86TB3 2170 aa17.34■□□□□ 0.37
CCDC88B-202ENST00000356786 MFSD2BA6NFX1 497 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 IFI44Q8TCB0 444 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 TMEM9BQ9NQ34 198 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 IL17BQ9UHF5 180 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 B4DEV8 164 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 CDC34P49427 236 aaPredicted RBP17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 HES1Q14469 280 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 MICBQ29980 383 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 PITPNC1Q9UKF7 332 aa17.33■□□□□ 0.37
CCDC88B-202ENST00000356786 HLA-DQB1P01920 261 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 RRADP55042 308 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 MESTQ5EB52 335 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 C1QL3Q5VWW1 255 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 SIRT7Q9NRC8 400 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 COX7A2P2O60397 106 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 MLF2Q15773 248 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 RGS7BPQ6MZT1 257 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 LIAT1Q6ZQX7 453 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 PECRQ9BY49 303 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 ST6GALNAC2Q9UJ37 374 aa17.33■□□□□ 0.36
CCDC88B-202ENST00000356786 TMEM178AQ8NBL3 297 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 THOC3Q96J01 351 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 FUT9Q9Y231 359 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 LRRC30A6NM36 301 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 DHRS7BQ6IAN0 325 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 FA2HQ7L5A8 372 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 MYPOPQ86VE0 399 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 SPACA9Q96E40 222 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 ACY3Q96HD9 319 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 CACFD1Q9UGQ2 172 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 ALG1L2C9J202 215 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 BMPR1BO00238 502 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 ZIC1Q15915 447 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 TSEN54Q7Z6J9 526 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 ASB5Q8WWX0 329 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 FGF14Q92915 247 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 MARVELD3Q96A59 401 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 ELSPBP1Q96BH3 223 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 TRIP11Q15643 1979 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 HPP00738 406 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 LPAR6P43657 344 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 TMEM215Q68D42 235 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 DPPA3Q6W0C5 159 aa17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 LILRB1Q8NHL6 650 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 APOBEC3DQ96AK3 386 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 ZNF707Q96C28 371 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-202ENST00000356786 PLPP3O14495 311 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 SEC11BP0C7V7 166 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 DMWDQ09019 674 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 SPATA46Q5T0L3 261 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 MCHR2Q969V1 340 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 FER1L6-AS2Q96M78 137 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 ZFP64Q9NPA5 681 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 SERGEFQ9UGK8 458 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 M0QZK8 103 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 CHST1O43916 411 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 GGCTO75223 188 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 RCC1P18754 421 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 NAAAQ02083 359 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 SPTBP11277 2137 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 MRGPRX3Q96LB0 322 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 ZNF253O75346 499 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 ZNF205O95201 554 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 GNG4P50150 75 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 WNT2BQ93097 391 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 DECR2Q9NUI1 292 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 VSIG4Q9Y279 399 aa17.31■□□□□ 0.36
CCDC88B-202ENST00000356786 HSF4Q9ULV5 492 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 CEACAM6P40199 344 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 GNG3P63215 75 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 OR5I1Q13606 314 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 ATP5SQ99766 215 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 CBR3O75828 277 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 VDAC1P21796 283 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 KCNE4Q8WWG9 221 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 TLNRD1Q9H1K6 362 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 M0R1X1 148 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 FBP1P09467 338 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 CD81P60033 236 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 ZAR1Q86SH2 424 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 OR8B12Q8NGG6 310 aa17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 MRPS24Q96EL2 167 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-202ENST00000356786 HLA-GP17693 338 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 PRSS12P56730 875 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 NANOS3P60323 173 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 GNB1P62873 340 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 PSG6Q00889 435 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 BARX1Q9HBU1 254 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 NGBQ9NPG2 151 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 VAX2Q9UIW0 290 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 DOCK5Q9H7D0 1870 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 VSIG8P0DPA2 414 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 RRP8O43159 456 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 CD226Q15762 336 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 ZNF774Q6NX45 483 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 ETV3LQ6ZN32 361 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 LYZL2Q7Z4W2 148 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms