RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 F8VWA3 439 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 BCL3P20749 454 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 HAAOP46952 286 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 IL15RAQ13261 267 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 SP6Q3SY56 376 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 HIKESHIQ53FT3 197 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 DHRS11Q6UWP2 260 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 BOLLQ8N9W6 283 aaKnown RBP12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 FAM117AQ9C073 453 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 LDAHQ9H6V9 325 aa12.8□□□□□ -0.36
CLCNKA-201ENST00000331433 ZNF728P0DKX0 622 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 FUT3P21217 361 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 FCGR2CP31995 323 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 RNPS1Q15287 305 aaKnown RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 IAH1Q2TAA2 248 aaPredicted RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 PLEKHN1Q494U1 663 aaPredicted RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 TMPRSS7Q7RTY8 843 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 ZFP62Q8NB50 900 aaPredicted RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 APOBEC3DQ96AK3 386 aaPredicted RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 MS4A7Q9GZW8 240 aaPredicted RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 OR51B6Q9H340 312 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 C12orf4Q9NQ89 552 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 CYTL1Q9NRR1 136 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 B8ZZF3 427 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 KRBOX1C9JBD0 128 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 GLI4P10075 376 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 LYL1P12980 280 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 CD46P15529 392 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 TRIP6Q15654 476 aaKnown RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 PHLDA2Q53GA4 152 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 TMEM200AQ86VY9 491 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 C17orf50Q8WW18 174 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 MRPL24Q96A35 216 aaKnown RBP12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 POM121L2Q96KW2 1035 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 ZNF286AQ9HBT8 521 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 IL36RNQ9UBH0 155 aa12.79□□□□□ -0.36
CLCNKA-201ENST00000331433 SIGLEC5O15389 551 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 M6PRP20645 277 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 ARG2P78540 354 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 VASH2Q86V25 355 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 ZDHHC23Q8IYP9 409 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 EIF4E3Q8N5X7 224 aaKnown RBP12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 STOML3Q8TAV4 291 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 ZNF552Q9H707 407 aaPredicted RBP12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 RNF122Q9H9V4 155 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 PCDHB16Q9NRJ7 776 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 SPRR3Q9UBC9 169 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 MED12LQ86YW9 2145 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 OTOGLQ3ZCN5 2332 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 COX5BP10606 129 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 STK11Q15831 433 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 ABCA11PQ4W5N1 156 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 C5orf24Q7Z6I8 188 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 BAP18Q8IXM2 172 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 SLC38A6Q8IZM9 456 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 RTN4IP1Q8WWV3 396 aaPredicted RBP12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 TAS2R3Q9NYW6 316 aa12.78□□□□□ -0.36
CLCNKA-201ENST00000331433 CNOT1A5YKK6 2376 aaKnown RBP12.77□□□□□ -0.36
CLCNKA-201ENST00000331433 A0A1B0GW55 424 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 ZNF732B4DXR9 585 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 IL18BPO95998 194 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 ACTL6AO96019 429 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 OR5AC1P0C628 307 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DUX4L2P0CJ85 424 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DUX4L3P0CJ86 424 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DUX4L4P0CJ87 422 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DUX4L5P0CJ88 424 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DUX4L6P0CJ89 424 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DUX4L7P0CJ90 424 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 TPT1P13693 172 aaKnown RBP12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 ARR3P36575 388 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 PMP22Q01453 160 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 ZNF766Q5HY98 468 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 GGNBP1Q5YKI7 109 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 ZNF585AQ6P3V2 769 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 AQP10Q96PS8 301 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 SHARPINQ9H0F6 387 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DUX4Q9UBX2 424 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 MEMO1Q9Y316 297 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 DMXL1Q9Y485 3027 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 HSPB6O14558 160 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 LILRA1O75019 489 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 SS18L1O75177 396 aaPredicted RBP12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 HOXD4P09016 255 aaPredicted RBP12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 PLP2Q04941 152 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 CEACAM21Q3KPI0 293 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 IGSF11Q5DX21 431 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 OR1S2Q8NGQ3 325 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 OR11L1Q8NGX0 322 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 TMED6Q8WW62 240 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 EXTL1Q92935 676 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 WDYHV1Q96HA8 205 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 NAA60Q9H7X0 242 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 OR2S2Q9NQN1 319 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 MTCH1Q9NZJ7 389 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 SPEF1Q9Y4P9 236 aa12.77□□□□□ -0.37
CLCNKA-201ENST00000331433 TNRC6AQ8NDV7 1962 aaKnown RBP12.76□□□□□ -0.37
CLCNKA-201ENST00000331433 PET100P0DJ07 73 aa12.76□□□□□ -0.37
CLCNKA-201ENST00000331433 DUSP1P28562 367 aa12.76□□□□□ -0.37
CLCNKA-201ENST00000331433 WNT5AP41221 380 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms