RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ATF1P18846 271 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 SLC37A1P57057 533 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 FAM209BQ5JX69 171 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 OR1F12Q8NHA8 337 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 OR6C1Q96RD1 312 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 MRPL13Q9BYD1 178 aaKnown RBP12.79□□□□□ -0.36
COL7A1-201ENST00000328333 DMRT1Q9Y5R6 373 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 TCF21O43680 179 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 CLDN18P56856 261 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 PMP22Q01453 160 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 DGAT2L7PQ6IED9 249 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 ALKAL1Q6UXT8 129 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 LILRB1Q8NHL6 650 aaPredicted RBP12.79□□□□□ -0.36
COL7A1-201ENST00000328333 CACNG5Q9UF02 275 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 RNPS1Q15287 305 aaKnown RBP12.79□□□□□ -0.36
COL7A1-201ENST00000328333 MORN1Q5T089 497 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 KMT5CQ86Y97 462 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 MYOZ3Q8TDC0 251 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 SLC46A2Q9BY10 475 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 ZNF253O75346 499 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 MELTFP08582 738 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 RER1O15258 196 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM65Q6PI78 240 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM183AQ8IXX5 376 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 ST6GAL2Q96JF0 529 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 PAAF1Q9BRP4 392 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 MIEN1Q9BRT3 115 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 OR5B21A6NL26 309 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 LMX1BO60663 402 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 GUSBP08236 651 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 SUCLG1P53597 346 aaKnown RBP12.79□□□□□ -0.36
COL7A1-201ENST00000328333 GNG3P63215 75 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 TTC9BQ8N6N2 239 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 SIRT6Q8N6T7 355 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 TINAGL1Q9GZM7 467 aaPredicted RBP12.79□□□□□ -0.36
COL7A1-201ENST00000328333 FGF21Q9NSA1 209 aa12.79□□□□□ -0.36
COL7A1-201ENST00000328333 CRHP06850 196 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 UBE2L3P68036 154 aaKnown RBP12.78□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM267Q0VDI3 215 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-201ENST00000328333 SLC36A1Q7Z2H8 476 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 PHOSPHO2Q8TCD6 241 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 PITX3O75364 302 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 SEC11BP0C7V7 166 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 C9orf135Q5VTT2 229 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 A0A1B0GU03 582 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 CTSDP07339 412 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-201ENST00000328333 SLURP2P0DP57 97 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 ZADH2Q8N4Q0 377 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 RAB37Q96AX2 223 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 ABHD14BQ96IU4 210 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 CDX2Q99626 313 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-201ENST00000328333 MARCH5Q9NX47 278 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 SLCO1C1Q9NYB5 712 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 HMX2A2RU54 273 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 PTGER1P34995 402 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 C21orf58P58505 322 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 PAQR6Q6TCH4 344 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 FAM219AQ8IW50 185 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 TIMP1P01033 207 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 CRYAAP02489 173 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM52BQ4KMG9 183 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 D2HGDHQ8N465 521 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 NAGKQ9UJ70 344 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 A0A0B4J2E0 115 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 A0A1B0GX12 115 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 LINC00052Q96N35 136 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 LRP12Q9Y561 859 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 AVPR2P30518 371 aa12.78□□□□□ -0.36
COL7A1-201ENST00000328333 SLC25A42Q86VD7 318 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 WNT1P04628 370 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 RHBDD1Q8TEB9 315 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 MEGF10Q96KG7 1140 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 PRDM7Q9NQW5 492 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 ICAM5Q9UMF0 924 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 ZNF785A8K8V0 405 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 PI3P19957 117 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM215Q68D42 235 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 ROBO4Q8WZ75 1007 aa12.77□□□□□ -0.36
COL7A1-201ENST00000328333 KLF13Q9Y2Y9 288 aaPredicted RBP12.77□□□□□ -0.36
COL7A1-201ENST00000328333 IL36GQ9NZH8 169 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 ZFPL1O95159 310 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 TIAL1Q01085 375 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL7A1-201ENST00000328333 KTI12Q96EK9 354 aaPredicted RBP12.77□□□□□ -0.37
COL7A1-201ENST00000328333 SIGLEC11Q96RL6 698 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 GPR61Q9BZJ8 451 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 OR1N2Q8NGR9 330 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 B9D1Q9UPM9 204 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 UFC1Q9Y3C8 167 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 H3BQ15 152 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 COL19A1Q14993 1142 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 C21orf62-AS1Q17RA5 79 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 ANKRD20A5PA0PJZ0 165 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 C7orf77A4D0Y5 90 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 CA2P00918 260 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 CA3P07451 260 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 KISS1Q15726 138 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 OR1L6Q8NGR2 347 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 ZNF707Q96C28 371 aaPredicted RBP12.77□□□□□ -0.37
COL7A1-201ENST00000328333 MOGAT1Q96PD6 335 aa12.77□□□□□ -0.37
COL7A1-201ENST00000328333 SLC25A22Q9H936 323 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms