RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CDC14BO60729 498 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 PTP4A3O75365 173 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 GYPAP02724 150 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 FBP1P09467 338 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 DDTP30046 118 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 HAAOP46952 286 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 DMRTC1Q5HYR2 192 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 ZADH2Q8N4Q0 377 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 OR1L3Q8NH93 324 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 KCNE4Q8WWG9 221 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 RAB24Q969Q5 203 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 MS4A3Q96HJ5 214 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 ESRP2Q9H6T0 727 aaKnown RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 CNTD2Q9H8S5 307 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 DMRT1Q9Y5R6 373 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 TRPM6Q9BX84 2022 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 SPINK4O60575 86 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 MUC1P15941 1255 aaPredicted RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 ZBTB25P24278 435 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 FGF8P55075 233 aaPredicted RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 PAX5Q02548 391 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 NUFIP2Q7Z417 695 aaKnown RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 ZDHHC23Q8IYP9 409 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 OR10G3Q8NGC4 313 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 NRTNQ99748 197 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 MPTX1A8MV57 137 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 TERTO14746 1132 aaKnown RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 DHHO43323 396 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 CELA2BP08218 269 aaPredicted RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 PCP4P48539 62 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 NHLH1Q02575 133 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 NHLH2Q02577 135 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 FOXO1Q12778 655 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 CLN3Q13286 438 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 C11orf42Q8N5U0 333 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 ANGPTL4Q9BY76 406 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 SLC25A22Q9H936 323 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 DUSP13Q9UII6 198 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 VAX2Q9UIW0 290 aa10.22□□□□□ -0.77
VPS39-201ENST00000318006 LSM2Q9Y333 95 aaKnown RBP10.22□□□□□ -0.77
VPS39-201ENST00000318006 BRWD1Q9NSI6 2320 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 ZNF207O43670 478 aaKnown RBP10.21□□□□□ -0.77
VPS39-201ENST00000318006 EIF3GO75821 320 aaKnown RBP eCLIP10.21□□□□□ -0.77
VPS39-201ENST00000318006 CBR3O75828 277 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 CDKN2AP42771 156 aaKnown RBP10.21□□□□□ -0.77
VPS39-201ENST00000318006 CDC34P49427 236 aaPredicted RBP10.21□□□□□ -0.77
VPS39-201ENST00000318006 OR10G4Q8NGN3 311 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 OR10G9Q8NGN4 311 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 OR10G7Q8NGN6 311 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 MANBALQ9NQG1 85 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 MRM2Q9UI43 246 aaKnown RBP10.21□□□□□ -0.77
VPS39-201ENST00000318006 A0A1B0GTQ1 180 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 ZNF253O75346 499 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 EPPINO95925 133 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 DEFA4P12838 97 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 SELEP16581 610 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 KIR2DL1P43626 348 aaPredicted RBP10.21□□□□□ -0.77
VPS39-201ENST00000318006 GNG4P50150 75 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 NXPH1P58417 271 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 SPCS3P61009 180 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 ERHP84090 104 aaKnown RBP10.21□□□□□ -0.77
VPS39-201ENST00000318006 MRGPREQ86SM8 312 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 OR5AS1Q8N127 324 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 CARFQ8N187 725 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 C10orf111Q8N326 155 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 FBLIM1Q8WUP2 373 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 ZPBPQ9BS86 351 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 TMEM191AQ9H0A3 160 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 ARRDC1-AS1Q9H2J1 176 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 FAM60AQ9NP50 221 aa10.21□□□□□ -0.77
VPS39-201ENST00000318006 PQLC2LA1A4F0 135 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 TMEM11P17152 192 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 GZMMP51124 257 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 PPP1CAP62136 330 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 ZNF117Q03924 483 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 OR8G1Q15617 311 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 HLA-DRB5Q30154 266 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 ZNF385CQ66K41 422 aaPredicted RBP10.21□□□□□ -0.78
VPS39-201ENST00000318006 GUSBP11Q6P575 273 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 EDARADDQ8WWZ3 215 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 RGP1Q92546 391 aaPredicted RBP10.21□□□□□ -0.78
VPS39-201ENST00000318006 LRRC3BQ96PB8 259 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 LANCL2Q9NS86 450 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 ZNF835Q9Y2P0 537 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 B2MP61769 119 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 POLR2GP62487 172 aaKnown RBP eCLIP10.21□□□□□ -0.78
VPS39-201ENST00000318006 ZNF816Q0VGE8 651 aaPredicted RBP10.21□□□□□ -0.78
VPS39-201ENST00000318006 BTNL3Q6UXE8 466 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 LDLRAD3Q86YD5 345 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 NOXO1Q8NFA2 376 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 S1PR3Q99500 378 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 PAM16Q9Y3D7 125 aa10.21□□□□□ -0.78
VPS39-201ENST00000318006 COX7A2P2O60397 106 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 ATP6V1FQ16864 119 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 ADPRHL1Q8NDY3 354 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 MRPS24Q96EL2 167 aaKnown RBP10.2□□□□□ -0.78
VPS39-201ENST00000318006 ATP5SQ99766 215 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 KCNK15Q9H427 330 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 NKX6-3A6NJ46 265 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 HPP00738 406 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms