RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 GPR87Q9BY21 358 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 NAA60Q9H7X0 242 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 GPR27Q9NS67 375 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 TINAGQ9UJW2 476 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 COL22A1Q8NFW1 1626 aaPredicted RBP10.14□□□□□ -0.79
USP53-201ENST00000274030 HOXC4P09017 264 aaPredicted RBP10.14□□□□□ -0.79
USP53-201ENST00000274030 PCMT1P22061 227 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 SEZ6L2Q6UXD5 910 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 C12orf57Q99622 126 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 SPAARA0A1B0GVQ0 90 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 CXorf58Q96LI9 332 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 TMEM147Q9BVK8 224 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 SLC2A8Q9NY64 477 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 TRAPPC1Q9Y5R8 145 aa10.14□□□□□ -0.79
USP53-201ENST00000274030 MAP1LC3B2A6NCE7 125 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 GEMIN2O14893 280 aaKnown RBP10.13□□□□□ -0.79
USP53-201ENST00000274030 TNFSF14O43557 240 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 B3GALNT1O75752 331 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 PGA3P0DJD8 388 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 CHRNA7P36544 502 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 FOXO1Q12778 655 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 ZNF770Q6IQ21 691 aaPredicted RBP10.13□□□□□ -0.79
USP53-201ENST00000274030 OR6X1Q8NH79 312 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 PECRQ9BY49 303 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 MAP1LC3BQ9GZQ8 125 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 POMT1Q9Y6A1 747 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 ZNHIT1O43257 154 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 CRYBA1P05813 215 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 CD300LDQ6UXZ3 194 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 PRSS44E7EML9 344 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 APELAP0DMC3 54 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 MESP2Q0VG99 397 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 SKP2Q13309 424 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 VAMP3Q15836 100 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 OR2C3Q8N628 320 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 PRR7Q8TB68 274 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 PTP4A1Q93096 173 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 CHRDL1Q9BU40 450 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 MSL2Q9HCI7 577 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 F5H697 171 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 GAB4Q2WGN9 574 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 ZNF260Q3ZCT1 412 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 MOB1BQ7L9L4 216 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 ATG4DQ86TL0 474 aaPredicted RBP10.13□□□□□ -0.79
USP53-201ENST00000274030 FBXL17Q9UF56 701 aa10.13□□□□□ -0.79
USP53-201ENST00000274030 LIPT2A6NK58 231 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 SPP1P10451 314 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 MGAT2Q10469 447 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 COL19A1Q14993 1142 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 LRRC3BQ96PB8 259 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 NAT8BQ9UHF3 227 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 IGKV3-7A0A075B6H7 116 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 TMEM127O75204 238 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 KCNJ3P48549 501 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 FA2HQ7L5A8 372 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 RAB40CQ96S21 281 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 hADV38S2A0JD32 116 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 TNXAQ16473 311 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 C11orf91Q3C1V1 193 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 HIKESHIQ53FT3 197 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 FAM24BQ8N5W8 94 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 TMEM52Q8NDY8 209 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 OR4F17Q8NGA8 305 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 WDFY2Q96P53 400 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 DTX4Q9Y2E6 619 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 C1QCP02747 245 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 LYZP61626 148 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 DMKNQ6E0U4 476 aaPredicted RBP10.12□□□□□ -0.79
USP53-201ENST00000274030 RNASEKQ6P5S7 137 aaKnown RBP10.12□□□□□ -0.79
USP53-201ENST00000274030 MYPOPQ86VE0 399 aaPredicted RBP10.12□□□□□ -0.79
USP53-201ENST00000274030 NUBPLQ8TB37 319 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 PTPMT1Q8WUK0 201 aaPredicted RBP10.12□□□□□ -0.79
USP53-201ENST00000274030 UNC13CQ8NB66 2214 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 KIR2DL1P43626 348 aaPredicted RBP10.12□□□□□ -0.79
USP53-201ENST00000274030 RTP5Q14D33 572 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 Q1RN00 199 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 CXXC4Q9H2H0 198 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 GAL3ST2Q9H3Q3 398 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 CACFD1Q9UGQ2 172 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 NPTNQ9Y639 398 aa10.12□□□□□ -0.79
USP53-201ENST00000274030 GVINP1Q7Z2Y8 2422 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 IGHV5-10-1A0A0J9YXX1 117 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 A0A1W2PPV9 198 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 KIAA1324LA8MWY0 1029 aaPredicted RBP10.11□□□□□ -0.79
USP53-201ENST00000274030 CYR61O00622 381 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 TOX3O15405 576 aaPredicted RBP10.11□□□□□ -0.79
USP53-201ENST00000274030 ZNF737O75373 536 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 BCL3P20749 454 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 RHOBP62745 196 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 IGFBP7Q16270 282 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 TBC1D26Q86UD7 250 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 MOGAT3Q86VF5 341 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 DYRK2Q92630 601 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 LRP5O75197 1615 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 MCM3APO60318 1980 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 ACTL6AO96019 429 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 FGF2P09038 288 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 NOL4LQ96MY1 436 aaPredicted RBP10.11□□□□□ -0.79
USP53-201ENST00000274030 ANKRD20A5PA0PJZ0 165 aa10.11□□□□□ -0.79
USP53-201ENST00000274030 M0R296 226 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms