RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NARS2Q96I59 477 aaKnown RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 MS4A5Q9H3V2 200 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF107Q9UII5 783 aaPredicted RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 TRIOO75962 3097 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 SNRPGP15A8MWD9 76 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 PLA2G10O15496 165 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 PI3P19957 117 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 EPHA1P21709 976 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 NFYBP25208 207 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 MDH2P40926 338 aaKnown RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 IFITM3Q01628 133 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 NAAAQ02083 359 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 PIGYQ3MUY2 71 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 OR8G5Q8NG78 346 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 OR1S1Q8NH92 325 aa10.01□□□□□ -0.81
VPS4A-201ENST00000254950 LSM5Q9Y4Y9 91 aaKnown RBP10.01□□□□□ -0.81
VPS4A-201ENST00000254950 A0A087WV48 116 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 PYCARD-AS1I3L0S3 204 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 ADRB1P08588 477 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 SLC6A1P30531 599 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 CHRNB4P30926 498 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 LUMP51884 338 aaPredicted RBP10□□□□□ -0.81
VPS4A-201ENST00000254950 FOXF2Q12947 444 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 DUSP18Q8NEJ0 188 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 A0A1W2PPH5 198 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 IFNA2P01563 188 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 TLE1Q04724 770 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 MOGAT3Q86VF5 341 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 OR5AP2Q8NGF4 316 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 FGFBP3Q8TAT2 258 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 SEC22AQ96IW7 307 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 REPIN1Q9BWE0 567 aaKnown RBP10□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF629Q9UEG4 869 aaPredicted RBP10□□□□□ -0.81
VPS4A-201ENST00000254950 PRH1P02810 166 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 OR4E1P0C645 316 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 CRYGSP22914 178 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 ACKR3P25106 362 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 RBM11P57052 281 aaKnown RBP10□□□□□ -0.81
VPS4A-201ENST00000254950 FOXL2NBQ6ZUU3 175 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 SREK1IP1Q8N9Q2 155 aaPredicted RBP10□□□□□ -0.81
VPS4A-201ENST00000254950 CCL17Q92583 94 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 MARVELD1Q9BSK0 173 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 MFFQ9GZY8 342 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 PLSCR4Q9NRQ2 329 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 EYSQ5T1H1 3165 aa10□□□□□ -0.81
VPS4A-201ENST00000254950 A0A0A6YYJ9 748 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 BORCS7-ASMTA0A0B4J1R7 106 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 LANCL1O43813 399 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 CST4P01036 141 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 IL5P05113 134 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 ASCL1P50553 236 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 NLRC3Q7RTR2 1065 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 OR8H3Q8N146 312 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 ZDHHC22Q8N966 263 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 DCUN1D4Q92564 292 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF319Q9P2F9 582 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 PFDN2Q9UHV9 154 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 ZNF318Q5VUA4 2279 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 C3orf80F5H4A9 247 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 RAB27BO00194 218 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 HSD17B6O14756 317 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 SSX4O60224 188 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 TUSC2O75896 110 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 CCL1P22362 96 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 BAMBIQ13145 260 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 MSMO1Q15800 293 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 HFEQ30201 348 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 PRAMEF6Q5VXH4 476 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 ADAM5Q6NVV9 412 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 NHLRC1Q6VVB1 395 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 RPS4Y2Q8TD47 263 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 GALMQ96C23 342 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 PKIBQ9C010 78 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 SAP30LQ9HAJ7 183 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 MYOZ1Q9NP98 299 aaPredicted RBP9.99□□□□□ -0.81
VPS4A-201ENST00000254950 OR2S2Q9NQN1 319 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 MBD3L4A6NDZ8 208 aaPredicted RBP9.99□□□□□ -0.81
VPS4A-201ENST00000254950 MBD3L3A6NE82 208 aaPredicted RBP9.99□□□□□ -0.81
VPS4A-201ENST00000254950 MBD3L5A6NJ08 208 aaPredicted RBP9.99□□□□□ -0.81
VPS4A-201ENST00000254950 E9PLN8 166 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 IGFBP3P17936 291 aaPredicted RBP9.99□□□□□ -0.81
VPS4A-201ENST00000254950 RAB2AP61019 212 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 FGF12P61328 243 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 KLF9Q13886 244 aaPredicted RBP9.99□□□□□ -0.81
VPS4A-201ENST00000254950 IGFL2Q6UWQ7 119 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 FBXW12Q6X9E4 464 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 MBD3L2Q8NHZ7 208 aaPredicted RBP9.99□□□□□ -0.81
VPS4A-201ENST00000254950 VKORC1Q9BQB6 163 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 PLEKHF2Q9H8W4 249 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 RNF7Q9UBF6 113 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 MAB21L2Q9Y586 359 aa9.99□□□□□ -0.81
VPS4A-201ENST00000254950 TMEM14DPA8MWL7 114 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 SMPD2O60906 423 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 MMP7P09237 267 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 NFYAP23511 347 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-201ENST00000254950 DTYMKP23919 212 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 GLRXP35754 106 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 IL13RA2Q14627 380 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 LINC00596Q86U02 117 aa9.98□□□□□ -0.81
VPS4A-201ENST00000254950 NR2C2APQ86WQ0 139 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms