RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 XRCC3O43542 346 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 CYB5R3P00387 301 aaPredicted RBP11.34□□□□□ -0.59
USP40-201ENST00000251722 INHBBP09529 407 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 MPGP29372 298 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 HMGA2P52926 109 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 SKP2Q13309 424 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 KIAA0040Q15053 153 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 MYO5AQ9Y4I1 1855 aaKnown RBP11.34□□□□□ -0.59
USP40-201ENST00000251722 A0A1W2PQF6 199 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 GPR37O15354 613 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 EPPINO95925 133 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 DAOP14920 347 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 PNRC1Q12796 327 aaPredicted RBP11.34□□□□□ -0.59
USP40-201ENST00000251722 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.34□□□□□ -0.59
USP40-201ENST00000251722 C11orf87Q6NUJ2 197 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 LINC00596Q86U02 117 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 OR51S1Q8NGJ8 323 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 C1RLQ9NZP8 487 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 GAGE10A6NGK3 116 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 SOX7Q9BT81 388 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 OR5V1Q9UGF6 321 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 CES1P1Q9UKY3 287 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 TRAPPC1Q9Y5R8 145 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 MFNGO00587 321 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 YIF1AO95070 293 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 NTF3P20783 257 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 F2RP25116 425 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 HYAL4Q2M3T9 481 aa11.34□□□□□ -0.59
USP40-201ENST00000251722 BCDIN3DQ7Z5W3 292 aaKnown RBP11.34□□□□□ -0.59
USP40-201ENST00000251722 COL11A2P13942 1736 aaPredicted RBP11.34□□□□□ -0.59
USP40-201ENST00000251722 NPIPB9F8W1W9 429 aa11.33□□□□□ -0.59
USP40-201ENST00000251722 SLC2A10O95528 541 aa11.33□□□□□ -0.59
USP40-201ENST00000251722 FGF5P12034 268 aa11.33□□□□□ -0.59
USP40-201ENST00000251722 EPHA2P29317 976 aa11.33□□□□□ -0.59
USP40-201ENST00000251722 ZNF528Q3MIS6 628 aa11.33□□□□□ -0.59
USP40-201ENST00000251722 VSTM2AQ8TAG5 236 aa11.33□□□□□ -0.59
USP40-201ENST00000251722 TRAV34A0A0B4J273 112 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 COX5AP20674 150 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 TCTAP57738 103 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 C1orf185Q5T7R7 199 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 OR13C5Q8NGS8 318 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 NUDCD2Q8WVJ2 157 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 TMEM230Q96A57 120 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 ONECUT1Q9UBC0 465 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 C7orf77A4D0Y5 90 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 SULT1A3P0DMM9 295 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 SULT1A4P0DMN0 295 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 FCGR2CP31995 323 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 ZNF90Q03938 601 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 C4orf45Q96LM5 186 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 KCNK7Q9Y2U2 307 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 FAM74A7A6NL05 159 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 FXYD1O00168 92 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 ZIC2O95409 532 aaPredicted RBP11.33□□□□□ -0.6
USP40-201ENST00000251722 FGF2P09038 288 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 ACKR3P25106 362 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 NPBWR1P48145 328 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 FAM74A3Q4VXF1 159 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 VASH2Q86V25 355 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 OR5AP2Q8NGF4 316 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 ALKBH7Q9BT30 221 aaPredicted RBP11.33□□□□□ -0.6
USP40-201ENST00000251722 SOX15O60248 233 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 CD160O95971 181 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 SP1P08047 785 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 WNT3P56703 355 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 CLDN23Q96B33 292 aa11.33□□□□□ -0.6
USP40-201ENST00000251722 WDR89Q96FK6 387 aaPredicted RBP11.33□□□□□ -0.6
USP40-201ENST00000251722 LRP3O75074 770 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 IGHV4-34P06331 123 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 FTH1P19P0C7X4 201 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 GPM6AP51674 278 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 STUMQ69YW2 141 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 FAM181AQ8N9Y4 354 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 ASB10Q8WXI3 467 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 VSTM2LQ96N03 204 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 HEXA-AS1Q9H8Q6 139 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 SP9P0CG40 484 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 SULT1A1P50225 295 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 MMP15P51511 669 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 PRDX4Q13162 271 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 SLC23A3Q6PIS1 610 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 MOB3BQ86TA1 216 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 ZNF441Q8N8Z8 693 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 BLNKQ8WV28 456 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 DNASE2BQ8WZ79 361 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 C2orf50Q96LR7 162 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 DNAJC4Q9NNZ3 241 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 CA11O75493 328 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 OR2M7Q8NG81 312 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 OR52N4Q8NGI2 321 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 WDR90Q96KV7 1748 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 MARCH11A6NNE9 402 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 ZNF32P17041 273 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 SURF2Q15527 256 aaPredicted RBP11.32□□□□□ -0.6
USP40-201ENST00000251722 LGALSLQ3ZCW2 172 aaPredicted RBP11.32□□□□□ -0.6
USP40-201ENST00000251722 ZDHHC22Q8N966 263 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 OR4B1Q8NGF8 309 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 OR52I2Q8NH67 350 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 SARGQ9BW04 601 aa11.32□□□□□ -0.6
USP40-201ENST00000251722 CHST2Q9Y4C5 530 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms