RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CD40P25942 277 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 BTN1A1Q13410 526 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 FAM219AQ8IW50 185 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 NFAM1Q8NET5 270 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-217ENST00000637988 GPR119Q8TDV5 335 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 SSC4DQ8WTU2 575 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 STARD4Q96DR4 205 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 FBXO8Q9NRD0 319 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 FAM53CQ9NYF3 392 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 SPI1P17947 270 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 FCARP24071 287 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 TSPOP30536 169 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 CDC34P49427 236 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-217ENST00000637988 PSMB2P49721 201 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 C11orf91Q3C1V1 193 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 Q6ZNB5 142 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 TMEM182Q6ZP80 229 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-217ENST00000637988 MRGPREQ86SM8 312 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 CALHM1Q8IU99 346 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 LSMEM1Q8N8F7 131 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 WFDC5Q8TCV5 224 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 SMIM12Q96EX1 92 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 POM121Q96HA1 1249 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 NPAS1Q99742 590 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 GPR61Q9BZJ8 451 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF446Q9NWS9 450 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 GAB2Q9UQC2 676 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 SPTA1P02549 2419 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 KMT2EQ8IZD2 1858 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 HIST1H1BP16401 226 aaKnown RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 GNG4P50150 75 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 PABPC1L2AQ5JQF8 200 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 OSGIN1Q9UJX0 560 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 NRXN3Q9Y4C0 1643 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 PPIAL4EA0A075B759 164 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 PPIAL4DF5H284 164 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 PPIAL4FP0DN26 164 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 FAM3AP98173 230 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 P2RY6Q15077 328 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 Q3ZCU0 254 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 TIGD3Q6B0B8 471 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF705AQ6ZN79 300 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 TBC1D26Q86UD7 250 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 OR4X2Q8NGF9 303 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 KCNK15Q9H427 330 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF768Q9H5H4 540 aaKnown RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SLC52A3Q9NQ40 469 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 PPIAL4AQ9Y536 164 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 PDGFBP01127 241 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 OR4C13Q8NGP0 309 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SGMS2Q8NHU3 365 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 C19orf43Q9BQ61 176 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 DOCK9Q9BZ29 2069 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 HMGN4O00479 90 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SPRY1O43609 319 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 OR4E1P0C645 316 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 PRR35P0CG20 571 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 OR3A1P47881 315 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 EMDP50402 254 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SPCS3P61009 180 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF787Q6DD87 383 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 C5orf17Q8NAS9 161 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 FAM168AQ92567 244 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 LHX4Q969G2 390 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SLC35B4Q969S0 331 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 OR8B4Q96RC9 309 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 VGLL1Q99990 258 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 DNAJB12Q9NXW2 375 aaKnown RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 BRCA1P38398 1863 aaKnown RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 ARFGEF1Q9Y6D6 1849 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 ABCA4P78363 2273 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 DLEC1Q9Y238 1755 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 HYAL3O43820 417 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 TAGLNQ01995 201 aaKnown RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SLC17A1Q14916 467 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 MMDQ15546 238 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 OIT3Q8WWZ8 545 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SF3B5Q9BWJ5 86 aaKnown RBP5.46□□□□□ -1.54
SCN1A-217ENST00000637988 SPTBN2O15020 2390 aa5.46□□□□□ -1.54
SCN1A-217ENST00000637988 TRPM3Q9HCF6 1732 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-217ENST00000637988 PNPP00491 289 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 ATP1B1P05026 303 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 TAS2R60P59551 318 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 SUMO1P63165 101 aaKnown RBP5.45□□□□□ -1.54
SCN1A-217ENST00000637988 SSBP1Q04837 148 aaKnown RBP5.45□□□□□ -1.54
SCN1A-217ENST00000637988 FAM27D1Q5T7N8 215 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 B3GNT8Q7Z7M8 397 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 RPS4Y2Q8TD47 263 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 CHRNA10Q9GZZ6 450 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF696Q9H7X3 374 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 MMP25Q9NPA2 562 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 PPP1R2P9O14990 202 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 LRP3O75074 770 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 SLC2A10O95528 541 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 CTSLP07711 333 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 DAOP14920 347 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 STARD6P59095 220 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 ISXQ2M1V0 245 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 OR2W3Q7Z3T1 314 aa5.45□□□□□ -1.54
SCN1A-217ENST00000637988 LINC00596Q86U02 117 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms