RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 INSL4Q14641 139 aa15.05■□□□□ -0
CLN3-239ENST00000628023 WDR25Q64LD2 544 aaPredicted RBP15.05■□□□□ -0
CLN3-239ENST00000628023 FAHD2BQ6P2I3 314 aaPredicted RBP15.05■□□□□ -0
CLN3-239ENST00000628023 IL17RELQ6ZVW7 336 aa15.05■□□□□ -0
CLN3-239ENST00000628023 CEACAM19Q7Z692 300 aa15.05■□□□□ -0
CLN3-239ENST00000628023 PNLDC1Q8NA58 520 aaKnown RBP15.05■□□□□ -0
CLN3-239ENST00000628023 OR4M2Q8NGB6 313 aa15.05■□□□□ -0
CLN3-239ENST00000628023 ANGPTL6Q8NI99 470 aa15.05■□□□□ -0
CLN3-239ENST00000628023 TNFAIP8L1Q8WVP5 186 aa15.05■□□□□ -0
CLN3-239ENST00000628023 ST8SIA4Q92187 359 aa15.05■□□□□ -0
CLN3-239ENST00000628023 FAHD2AQ96GK7 314 aa15.05■□□□□ -0
CLN3-239ENST00000628023 DNTTIP1Q9H147 329 aa15.05■□□□□ -0
CLN3-239ENST00000628023 ELL3Q9HB65 397 aaPredicted RBP15.05■□□□□ -0
CLN3-239ENST00000628023 HES4Q9HCC6 221 aa15.05■□□□□ -0
CLN3-239ENST00000628023 KAAG1Q9UBP8 84 aa15.05■□□□□ -0
CLN3-239ENST00000628023 FOXJ3Q9UPW0 622 aa15.05■□□□□ -0
CLN3-239ENST00000628023 RFPL4AA6NLU0 287 aa15.04■□□□□ -0
CLN3-239ENST00000628023 RFPL4AL1F8VTS6 287 aa15.04■□□□□ -0
CLN3-239ENST00000628023 TNFRSF13BO14836 293 aaPredicted RBP15.04■□□□□ -0
CLN3-239ENST00000628023 NDUFB3O43676 98 aa15.04■□□□□ -0
CLN3-239ENST00000628023 RGS9O75916 674 aaPredicted RBP15.04■□□□□ -0
CLN3-239ENST00000628023 TFF1P04155 84 aa15.04■□□□□ -0
CLN3-239ENST00000628023 ALDOBP05062 364 aa15.04■□□□□ -0
CLN3-239ENST00000628023 ACAA1P09110 424 aaPredicted RBP15.04■□□□□ -0
CLN3-239ENST00000628023 PSG2P11465 335 aa15.04■□□□□ -0
CLN3-239ENST00000628023 IGFBP3P17936 291 aaPredicted RBP15.04■□□□□ -0
CLN3-239ENST00000628023 ZNF93P35789 620 aaPredicted RBP15.04■□□□□ -0
CLN3-239ENST00000628023 IL13RA1P78552 427 aa15.04■□□□□ -0
CLN3-239ENST00000628023 CR1LQ2VPA4 569 aa15.04■□□□□ -0
CLN3-239ENST00000628023 LRRC10Q5BKY1 277 aa15.04■□□□□ -0
CLN3-239ENST00000628023 UBE2UQ5VVX9 321 aa15.04■□□□□ -0
CLN3-239ENST00000628023 DCAF12L2Q5VW00 463 aa15.04■□□□□ -0
CLN3-239ENST00000628023 RNF144BQ7Z419 303 aa15.04■□□□□ -0
CLN3-239ENST00000628023 MED30Q96HR3 178 aa15.04■□□□□ -0
CLN3-239ENST00000628023 GAFA1Q96PS6 74 aa15.04■□□□□ -0
CLN3-239ENST00000628023 TCF7L1Q9HCS4 588 aa15.04■□□□□ -0
CLN3-239ENST00000628023 RBFOX1Q9NWB1 397 aaKnown RBP15.04■□□□□ -0
CLN3-239ENST00000628023 IGKV1D-17A0A075B6S4 117 aa15.03■□□□□ -0
CLN3-239ENST00000628023 LOC105371242A0A075B767 164 aa15.03■□□□□ -0
CLN3-239ENST00000628023 A0A1B0GW55 424 aa15.03■□□□□ -0
CLN3-239ENST00000628023 GABRPO00591 440 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DVL1O14640 695 aa15.03■□□□□ -0
CLN3-239ENST00000628023 GPX5O75715 221 aa15.03■□□□□ -0
CLN3-239ENST00000628023 KNG1P01042 644 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4L2P0CJ85 424 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4L3P0CJ86 424 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4L4P0CJ87 422 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4L5P0CJ88 424 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4L6P0CJ89 424 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4L7P0CJ90 424 aa15.03■□□□□ -0
CLN3-239ENST00000628023 GABRA5P31644 462 aa15.03■□□□□ -0
CLN3-239ENST00000628023 CAPZA1P52907 286 aa15.03■□□□□ -0
CLN3-239ENST00000628023 SNU13P55769 128 aaKnown RBP15.03■□□□□ -0
CLN3-239ENST00000628023 ZP1P60852 638 aa15.03■□□□□ -0
CLN3-239ENST00000628023 ERVK11-1P61568 191 aa15.03■□□□□ -0
CLN3-239ENST00000628023 NEDD8Q15843 81 aa15.03■□□□□ -0
CLN3-239ENST00000628023 KRTAP24-1Q3LI83 254 aa15.03■□□□□ -0
CLN3-239ENST00000628023 HSD17B12Q53GQ0 312 aa15.03■□□□□ -0
CLN3-239ENST00000628023 ATPAF1Q5TC12 328 aaPredicted RBP15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4L9Q6RFH8 374 aaPredicted RBP15.03■□□□□ -0
CLN3-239ENST00000628023 BTNL3Q6UXE8 466 aa15.03■□□□□ -0
CLN3-239ENST00000628023 ZNF841Q6ZN19 808 aa15.03■□□□□ -0
CLN3-239ENST00000628023 SAXO1Q8IYX7 474 aa15.03■□□□□ -0
CLN3-239ENST00000628023 FAM58AQ8N1B3 248 aa15.03■□□□□ -0
CLN3-239ENST00000628023 JAGN1Q8N5M9 183 aa15.03■□□□□ -0
CLN3-239ENST00000628023 ZSCAN4Q8NAM6 433 aaPredicted RBP15.03■□□□□ -0
CLN3-239ENST00000628023 TMEM185AQ8NFB2 350 aa15.03■□□□□ -0
CLN3-239ENST00000628023 NKX3-1Q99801 234 aaPredicted RBP15.03■□□□□ -0
CLN3-239ENST00000628023 SLITRK2Q9H156 845 aa15.03■□□□□ -0
CLN3-239ENST00000628023 DUX4Q9UBX2 424 aa15.03■□□□□ -0
CLN3-239ENST00000628023 CUBNO60494 3623 aa15.03■□□□□ -0
CLN3-239ENST00000628023 MAGEA13PA6NCF6 341 aa15.02■□□□□ -0
CLN3-239ENST00000628023 F8VVB4 439 aa15.02■□□□□ -0
CLN3-239ENST00000628023 F8VWA3 439 aa15.02■□□□□ -0
CLN3-239ENST00000628023 CCRL2O00421 344 aa15.02■□□□□ -0
CLN3-239ENST00000628023 SIGLEC5O15389 551 aa15.02■□□□□ -0
CLN3-239ENST00000628023 PIN1P1O15428 100 aa15.02■□□□□ -0
CLN3-239ENST00000628023 KDM4BO94953 1096 aa15.02■□□□□ -0
CLN3-239ENST00000628023 CALCBP10092 127 aa15.02■□□□□ -0
CLN3-239ENST00000628023 SELLP14151 372 aa15.02■□□□□ -0
CLN3-239ENST00000628023 PRKACAP17612 351 aa15.02■□□□□ -0
CLN3-239ENST00000628023 GATA3P23771 443 aa15.02■□□□□ -0
CLN3-239ENST00000628023 PRDX2P32119 198 aa15.02■□□□□ -0
CLN3-239ENST00000628023 SRP14P37108 136 aaKnown RBP15.02■□□□□ -0
CLN3-239ENST00000628023 OR3A4PP47883 348 aa15.02■□□□□ -0
CLN3-239ENST00000628023 NPBWR2P48146 333 aa15.02■□□□□ -0
CLN3-239ENST00000628023 CEBPDP49716 269 aaPredicted RBP15.02■□□□□ -0
CLN3-239ENST00000628023 FAM27D1Q5T7N8 215 aa15.02■□□□□ -0
CLN3-239ENST00000628023 CD276Q5ZPR3 534 aa15.02■□□□□ -0
CLN3-239ENST00000628023 ZNF788Q6ZQV5 615 aa15.02■□□□□ -0
CLN3-239ENST00000628023 NKAIN3Q8N8D7 197 aa15.02■□□□□ -0
CLN3-239ENST00000628023 S100A13Q99584 98 aa15.02■□□□□ -0
CLN3-239ENST00000628023 C19orf24Q9BVV8 132 aa15.02■□□□□ -0
CLN3-239ENST00000628023 VCX3AQ9NNX9 186 aa15.02■□□□□ -0
CLN3-239ENST00000628023 SLC25A10Q9UBX3 287 aaPredicted RBP15.02■□□□□ -0
CLN3-239ENST00000628023 GLS2Q9UI32 602 aa15.02■□□□□ -0
CLN3-239ENST00000628023 ZNF222Q9UK12 451 aa15.02■□□□□ -0
CLN3-239ENST00000628023 PPIAL4CA0A0B4J2A2 164 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 IGKV1-12A0A0C4DH73 117 aa15.01□□□□□ -0.01
CLN3-239ENST00000628023 ENSAO43768 121 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms