RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 TUSC1Q2TAM9 212 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 TMPRSS11AQ6ZMR5 421 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 LHFPL2Q6ZUX7 228 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 PDZD9Q8IXQ8 264 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 FAM185AQ8N0U4 392 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 KIR3DL3Q8N743 410 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 GATAD2BQ8WXI9 593 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 RFT1Q96AA3 541 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 SPACA5Q96QH8 159 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 SIRT7Q9NRC8 400 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 DHDHQ9UQ10 334 aa13.16□□□□□ -0.3
BRCA1-228ENST00000618469 CENPVL3A0A0U1RRI6 287 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 F8VVB4 439 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 F8VWA3 439 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 XPNPEP2O43895 674 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 CYB5AP00167 134 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 PRDX2P32119 198 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 COMPP49747 757 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-228ENST00000618469 PRB3Q04118 309 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-228ENST00000618469 BAMBIQ13145 260 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 MED21Q13503 144 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 ZNF561Q8N587 486 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 ASCC1Q8N9N2 400 aaKnown RBP13.15□□□□□ -0.3
BRCA1-228ENST00000618469 FAM216AQ8WUB2 273 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 RGP1Q92546 391 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-228ENST00000618469 EMG1Q92979 244 aaKnown RBP13.15□□□□□ -0.3
BRCA1-228ENST00000618469 TMEM80Q96HE8 168 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 C1orf147Q96MC9 270 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-228ENST00000618469 ZCCHC4Q9H5U6 513 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 C19orf12Q9NSK7 152 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 CLEC2DQ9UHP7 191 aa13.15□□□□□ -0.3
BRCA1-228ENST00000618469 TRBV23-1A0A0A0MS06 115 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 IGHV1-69DA0A0B4J2H0 117 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 IGHV1-69P01742 117 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 HCKP08631 526 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 RPSAP08865 295 aaKnown RBP13.14□□□□□ -0.31
BRCA1-228ENST00000618469 PIPP12273 146 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-228ENST00000618469 BCL3P20749 454 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 SOX2P48431 317 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 AQP4P55087 323 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 DLX1P56177 255 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 BPIFB3P59826 476 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 ST3GAL4Q11206 333 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 DEFB112Q30KQ8 113 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 CCDC58Q4VC31 144 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 LAIR2Q6ISS4 152 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 RPL22L1Q6P5R6 122 aaKnown RBP13.14□□□□□ -0.31
BRCA1-228ENST00000618469 AHSA2Q719I0 299 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 MKXQ8IYA7 352 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 Q8IYB0 196 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 OR5D18Q8NGL1 313 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 NRG4Q8WWG1 115 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 GGHQ92820 318 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 DMRTB1Q96MA1 342 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 NEK6Q9HC98 313 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 RBFOX1Q9NWB1 397 aaKnown RBP13.14□□□□□ -0.31
BRCA1-228ENST00000618469 CHCHD3Q9NX63 227 aaKnown RBP13.14□□□□□ -0.31
BRCA1-228ENST00000618469 IL36RNQ9UBH0 155 aa13.14□□□□□ -0.31
BRCA1-228ENST00000618469 EFCAB10A6NFE3 127 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 SULT1B1O43704 296 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 ANGPTL7O43827 346 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 LALBAP00709 142 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 PRTN3P24158 256 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 SNU13P55769 128 aaKnown RBP13.13□□□□□ -0.31
BRCA1-228ENST00000618469 COL10A1Q03692 680 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 KLRD1Q13241 179 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 AWAT1Q58HT5 328 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 FIP1L1Q6UN15 594 aaKnown RBP13.13□□□□□ -0.31
BRCA1-228ENST00000618469 PARP16Q8N5Y8 322 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 Q8N7P7 452 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 BPIFB6Q8NFQ5 453 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 OR52N1Q8NH53 320 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 RPS4Y2Q8TD47 263 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 FBLIM1Q8WUP2 373 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 TFAP2CQ92754 450 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 ZDHHC16Q969W1 377 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 SMIM19Q96E16 107 aa13.13□□□□□ -0.31
BRCA1-228ENST00000618469 ZMAT3Q9HA38 289 aaKnown RBP13.13□□□□□ -0.31
BRCA1-228ENST00000618469 CNOT2Q9NZN8 540 aaKnown RBP13.13□□□□□ -0.31
BRCA1-228ENST00000618469 M0R1W7 72 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 MT-ND2P03891 347 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 TK1P04183 234 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 CD2P06729 351 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 CALCBP10092 127 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 PRKACAP17612 351 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 NPBWR2P48146 333 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 RPL31P62899 125 aaKnown RBP13.12□□□□□ -0.31
BRCA1-228ENST00000618469 PDZK1IP1Q13113 114 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 BLMHQ13867 455 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 RNF144BQ7Z419 303 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 SERPINA12Q8IW75 414 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 STX19Q8N4C7 294 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 ZFP41Q8N8Y5 198 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 OR4M1Q8NGD0 313 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 OR5D14Q8NGL3 314 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 GPR148Q8TDV2 347 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 BABAM2Q9NXR7 383 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 PSORS1C1Q9UIG5 152 aa13.12□□□□□ -0.31
BRCA1-228ENST00000618469 SIRT4Q9Y6E7 314 aaPredicted RBP13.12□□□□□ -0.31
BRCA1-228ENST00000618469 IGKV1-12A0A0C4DH73 117 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms