RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 FRRS1LQ9P0K9 344 aa8.62□□□□□ -1.03
LIG3-212ENST00000590181 DSCAML1Q8TD84 2053 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 NBEAL2Q6ZNJ1 2754 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 TRBV2A0A0J9YWF9 115 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 FAM230AA0A1W2PPH8 454 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 J3QLW9 94 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 NPFFO15130 113 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 MAGEB3O15480 346 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 MAGEB4O15481 346 aaPredicted RBP8.61□□□□□ -1.03
LIG3-212ENST00000590181 CD2P06729 351 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 MELTFP08582 738 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 ZNF19P17023 458 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 ATF1P18846 271 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 PEX2P28328 305 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 ERP29P30040 261 aaKnown RBP8.61□□□□□ -1.03
LIG3-212ENST00000590181 TGFBR2P37173 567 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 RBMXP38159 391 aaKnown RBP8.61□□□□□ -1.03
LIG3-212ENST00000590181 MTCP1P56278 107 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 OR12D2P58182 307 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 ERVFRD-1P60508 538 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 HNRNPA0Q13151 305 aaKnown RBP8.61□□□□□ -1.03
LIG3-212ENST00000590181 ZNF146Q15072 292 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 ZIK1Q3SY52 487 aaPredicted RBP8.61□□□□□ -1.03
LIG3-212ENST00000590181 TP53I3Q53FA7 332 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 PARP16Q8N5Y8 322 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 Q8N7P7 452 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 ZNF676Q8N7Q3 588 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 CHST4Q8NCG5 386 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 OR5AK2Q8NH90 309 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 TNFRSF14Q92956 283 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 PELI1Q96FA3 418 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 C1orf147Q96MC9 270 aaPredicted RBP8.61□□□□□ -1.03
LIG3-212ENST00000590181 ALG8Q9BVK2 526 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 MEGF9Q9H1U4 602 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 VCXQ9H320 206 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 CHCHD3Q9NX63 227 aaKnown RBP8.61□□□□□ -1.03
LIG3-212ENST00000590181 ERVK13-1Q9NX77 482 aa8.61□□□□□ -1.03
LIG3-212ENST00000590181 WNK1Q9H4A3 2382 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 hADV38S2A0JD32 116 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 OR4C45A6NMZ5 311 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 SH2D1BO14796 132 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 SYNGR1O43759 233 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 FCN3O75636 299 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 INMTO95050 263 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 BAG2O95816 211 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 KIR3DL2P43630 455 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 LGALS4P56470 323 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 ZNF91Q05481 1191 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 PDZK1IP1Q13113 114 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 TMEM200BQ69YZ2 307 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 RPL22L1Q6P5R6 122 aaKnown RBP8.6□□□□□ -1.03
LIG3-212ENST00000590181 GDPD3Q7L5L3 318 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 ANGPTL5Q86XS5 388 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 OR8H2Q8N162 312 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 FAM58AQ8N1B3 248 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 CD177Q8N6Q3 437 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 BEND2Q8NDZ0 799 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 OR13C3Q8NGS6 347 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 THRSPQ92748 146 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 UBE2FQ969M7 185 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 FGGYQ96C11 551 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 SEH1LQ96EE3 360 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 C4orf36Q96KX1 117 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 OPALINQ96PE5 141 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 SLC29A1Q99808 456 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 TTTY10Q9BZA0 68 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 NCOR1P1Q9H4R4 102 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 ZCCHC4Q9H5U6 513 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 MTCH1Q9NZJ7 389 aa8.6□□□□□ -1.03
LIG3-212ENST00000590181 IGHV3OR16-10A0A075B7F0 116 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 RNASEK-C17orf49H0YIS7 233 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 MGST3O14880 152 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 ALDOBP05062 364 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 ZNF728P0DKX0 622 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 MYL12AP19105 171 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 AZGP1P25311 298 aaKnown RBP8.59□□□□□ -1.03
LIG3-212ENST00000590181 LMO1P25800 156 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 GMFBP60983 142 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 ODF4Q2M2E3 257 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 OR52W1Q6IF63 320 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 SLC25A26Q70HW3 274 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 LHFPL3Q86UP9 236 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 FAM185AQ8N0U4 392 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 PIP4P2Q8N4L2 257 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 DHRSXQ8N5I4 330 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 OR13D1Q8NGV5 346 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 TRMT10AQ8TBZ6 339 aaKnown RBP8.59□□□□□ -1.03
LIG3-212ENST00000590181 RNF166Q96A37 237 aaPredicted RBP8.59□□□□□ -1.03
LIG3-212ENST00000590181 CREB3L1Q96BA8 519 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 FOXRED1Q96CU9 486 aaPredicted RBP8.59□□□□□ -1.03
LIG3-212ENST00000590181 MALSU1Q96EH3 234 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 C16orf95Q9H693 158 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 PAK1IP1Q9NWT1 392 aaPredicted RBP8.59□□□□□ -1.03
LIG3-212ENST00000590181 ZNRD1Q9P1U0 126 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 VPREB3Q9UKI3 123 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 DHDHQ9UQ10 334 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 EXOSC1Q9Y3B2 195 aaKnown RBP8.59□□□□□ -1.03
LIG3-212ENST00000590181 TBL2Q9Y4P3 447 aaKnown RBP8.59□□□□□ -1.03
LIG3-212ENST00000590181 LINC00312Q9Y6C7 94 aa8.59□□□□□ -1.03
LIG3-212ENST00000590181 A0A0U1RQK1 487 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms