RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PPA2Q9H2U2 334 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 ZNF701Q9NV72 531 aaPredicted RBP12.17□□□□□ -0.46
LIG3-205ENST00000585941 VSIG4Q9Y279 399 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 TP53TG5Q9Y2B4 290 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 FAM215AQ9Y5M1 114 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 A0A1W2PR80 420 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 OR5H1A6NKK0 313 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 OR2AT4A6NND4 320 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 IQCF6A8MYZ5 107 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 RGS11O94810 467 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 IGLV1-44P01699 117 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 DNASE1P24855 282 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 IL24Q13007 206 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 SURF2Q15527 256 aaPredicted RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 OVCH2Q7RTZ1 564 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 MYPOPQ86VE0 399 aaPredicted RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 BHLHE23Q8NDY6 225 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 OR1J1Q8NGS3 322 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 OR2T35Q8NGX2 323 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 TMEM246Q9BRR3 403 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 FAAP24Q9BTP7 215 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 BCL2L14Q9BZR8 327 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 FGF23Q9GZV9 251 aaPredicted RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 OPN3Q9H1Y3 402 aaPredicted RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 OR51B6Q9H340 312 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 AK3Q9UIJ7 227 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 ANKRD11Q6UB99 2663 aaPredicted RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 SPTBN2O15020 2390 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 SMLR1H3BR10 107 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 TOXO94900 526 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 CEACAM8P31997 349 aaPredicted RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 ARPC4P59998 168 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 IFITM2Q01629 132 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 DHRS2Q13268 280 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 C3orf36Q3SXR2 165 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 TMEM211Q6ICI0 200 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 LPCAT3Q6P1A2 487 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 LYG2Q86SG7 212 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 LHFPL1Q86WI0 220 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 ASCC1Q8N9N2 400 aaKnown RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 SLAMF9Q96A28 289 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 MRGPRFQ96AM1 343 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 SULT4A1Q9BR01 284 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 OR2J1Q9GZK6 312 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 SPACA1Q9HBV2 294 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 EHFQ9NZC4 300 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 CRIM1Q9NZV1 1036 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 ZNF629Q9UEG4 869 aaPredicted RBP12.16□□□□□ -0.46
LIG3-205ENST00000585941 MGAT4AQ9UM21 535 aa12.16□□□□□ -0.46
LIG3-205ENST00000585941 FRYQ5TBA9 3013 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 J3QT63 122 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 PRRG2O14669 202 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 OR7C1O76099 320 aaPredicted RBP12.15□□□□□ -0.46
LIG3-205ENST00000585941 ZNF35P13682 527 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 BCL3P20749 454 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 CA6P23280 308 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 FPR2P25090 351 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 NPBWR2P48146 333 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 TMPRSS3P57727 454 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 TSC22D1Q15714 1073 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 SPATA46Q5T0L3 261 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 NAXEQ8NCW5 288 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 TMEM185AQ8NFB2 350 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 SLC25A40Q8TBP6 338 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 C12orf4Q9NQ89 552 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 ZNF230Q9UIE0 474 aaPredicted RBP12.15□□□□□ -0.46
LIG3-205ENST00000585941 ANXA10Q9UJ72 324 aa12.15□□□□□ -0.46
LIG3-205ENST00000585941 LRP5LA4QPB2 252 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 SLC22A5O76082 557 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 HLA-AP01891 365 aaKnown RBP12.14□□□□□ -0.47
LIG3-205ENST00000585941 GLAP06280 429 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 FCGR3AP08637 254 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 ZBTB25P24278 435 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 IL13RA2Q14627 380 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 SRSF7Q16629 238 aaKnown RBP eCLIP12.14□□□□□ -0.47
LIG3-205ENST00000585941 TMEM128Q5BJH2 165 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 FAM76BQ5HYJ3 339 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 TIMM23BQ5SRD1 257 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 LIN54Q6MZP7 749 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 C11orf88Q6PI97 169 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 HAGHLQ6PII5 290 aaPredicted RBP12.14□□□□□ -0.47
LIG3-205ENST00000585941 PEG10Q86TG7 708 aaKnown RBP12.14□□□□□ -0.47
LIG3-205ENST00000585941 Q8IYB0 196 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 C9orf62Q8N4C0 152 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 UXS1Q8NBZ7 420 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 MARCH1Q8TCQ1 289 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 PHB2Q99623 299 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 DHRS9Q9BPW9 319 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 SLX1AQ9BQ83 275 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 OR51I2Q9H344 312 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 CA10Q9NS85 328 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 NECAP2Q9NVZ3 263 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 MTCH1Q9NZJ7 389 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 PIPOXQ9P0Z9 390 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 LUZP4Q9P127 313 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 GPR132Q9UNW8 380 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 POLDIP2Q9Y2S7 368 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 HSPB11Q9Y547 144 aa12.14□□□□□ -0.47
LIG3-205ENST00000585941 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 C9orf170A2RU37 121 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms