RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 HOXA3O43365 443 aaPredicted RBP16.54■□□□□ 0.24
NUP88-204ENST00000572290 CAPGP40121 348 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 ETV1P50549 477 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 GUCA2AQ02747 115 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 Q6YL49 198 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 TMPRSS11AQ6ZMR5 421 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 Q8IYB0 196 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 PDCD1LG2Q9BQ51 273 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 FAM234AQ9H0X4 552 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 ZCCHC4Q9H5U6 513 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 NEK6Q9HC98 313 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 C19orf12Q9NSK7 152 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 CAB39Q9Y376 341 aaPredicted RBP16.54■□□□□ 0.24
NUP88-204ENST00000572290 HSPE1-MOB4S4R3N1 261 aa16.54■□□□□ 0.24
NUP88-204ENST00000572290 H0YAE9 185 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 MT-ND2P03891 347 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 TK1P04183 234 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 CHRM2P08172 466 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 HKR1P10072 659 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 GTF2A1P52655 376 aaPredicted RBP16.53■□□□□ 0.24
NUP88-204ENST00000572290 RPL31P62899 125 aaKnown RBP16.53■□□□□ 0.24
NUP88-204ENST00000572290 COL10A1Q03692 680 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 PRB3Q04118 309 aaPredicted RBP16.53■□□□□ 0.24
NUP88-204ENST00000572290 TNFRSF14Q92956 283 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 EMG1Q92979 244 aaKnown RBP16.53■□□□□ 0.24
NUP88-204ENST00000572290 VCXQ9H320 206 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 DCLRE1BQ9H816 532 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 METTL8Q9H825 291 aaKnown RBP16.53■□□□□ 0.24
NUP88-204ENST00000572290 DIMT1Q9UNQ2 313 aaKnown RBP16.53■□□□□ 0.24
NUP88-204ENST00000572290 DHDHQ9UQ10 334 aa16.53■□□□□ 0.24
NUP88-204ENST00000572290 EXOSC1Q9Y3B2 195 aaKnown RBP16.53■□□□□ 0.24
NUP88-204ENST00000572290 A0A0U1RQK1 487 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 A0A1W2PPH5 198 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 RNASEK-C17orf49H0YIS7 233 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 HAX1O00165 279 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 MELTFP08582 738 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 MYL12AP19105 171 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 EEF1B2P24534 225 aaKnown RBP16.52■□□□□ 0.24
NUP88-204ENST00000572290 DLX1P56177 255 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 PDZK1IP1Q13113 114 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 CCDC58Q4VC31 144 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 OR2G6Q5TZ20 316 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 NCR3LG1Q68D85 454 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 RPL22L1Q6P5R6 122 aaKnown RBP16.52■□□□□ 0.24
NUP88-204ENST00000572290 SERPINA12Q8IW75 414 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 C8orf59Q8N0T1 100 aaPredicted RBP16.52■□□□□ 0.24
NUP88-204ENST00000572290 PIP4P2Q8N4L2 257 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 ASCC1Q8N9N2 400 aaKnown RBP16.52■□□□□ 0.24
NUP88-204ENST00000572290 OR4M1Q8NGD0 313 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 OR5D14Q8NGL3 314 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 TSEN15Q8WW01 171 aaKnown RBP16.52■□□□□ 0.24
NUP88-204ENST00000572290 RFT1Q96AA3 541 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 TMEM80Q96HE8 168 aa16.52■□□□□ 0.24
NUP88-204ENST00000572290 UNKLQ9H9P5 680 aaKnown RBP16.52■□□□□ 0.24
NUP88-204ENST00000572290 CHCHD3Q9NX63 227 aaKnown RBP16.52■□□□□ 0.24
NUP88-204ENST00000572290 K7N7A8 449 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 SPRY1O43609 319 aaPredicted RBP16.51■□□□□ 0.23
NUP88-204ENST00000572290 BCL3P20749 454 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 NPBWR2P48146 333 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 GABPB1Q06547 395 aaPredicted RBP16.51■□□□□ 0.23
NUP88-204ENST00000572290 KLRD1Q13241 179 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 MED21Q13503 144 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 CDK5R1Q15078 307 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 C16orf87Q6PH81 154 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 FIP1L1Q6UN15 594 aaKnown RBP16.51■□□□□ 0.23
NUP88-204ENST00000572290 FAM58AQ8N1B3 248 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 PARP16Q8N5Y8 322 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 TMEM86BQ8N661 226 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 OR5D13Q8NGL4 314 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 TBC1D15Q8TC07 691 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 SPACA5Q96QH8 159 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 TNFRSF19Q9NS68 423 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 RBFOX1Q9NWB1 397 aaKnown RBP16.51■□□□□ 0.23
NUP88-204ENST00000572290 FAM96BQ9Y3D0 163 aa16.51■□□□□ 0.23
NUP88-204ENST00000572290 A0A1W2PRD5 423 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 A0A1W2PRF3 423 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 A0A1W2PRM7 423 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 NPFFO15130 113 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 ZNF737O75373 536 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 ALX3O95076 343 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 GNAO1P09471 354 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 FOXL1Q12952 345 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 AWAT1Q58HT5 328 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 TMEM200BQ69YZ2 307 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 XAF1Q6GPH4 301 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 GGHQ92820 318 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 SEBOXQ9HB31 216 aaPredicted RBP16.5■□□□□ 0.23
NUP88-204ENST00000572290 BABAM2Q9NXR7 383 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 IL36RNQ9UBH0 155 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 CLEC2DQ9UHP7 191 aa16.5■□□□□ 0.23
NUP88-204ENST00000572290 SULT1B1O43704 296 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 ANGPTL7O43827 346 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 HAND1O96004 215 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 HCKP08631 526 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 PRKACAP17612 351 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 CFPP27918 469 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 SOX2P48431 317 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 UBE2E1P51965 193 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 SLC34A1Q06495 639 aa16.49■□□□□ 0.23
NUP88-204ENST00000572290 RNF144BQ7Z419 303 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms