RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 MEF2CQ06413 473 aaPredicted RBP9.17□□□□□ -0.94
CLK3-222ENST00000568232 FHL3Q13643 280 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 SRSF7Q16629 238 aaKnown RBP eCLIP9.17□□□□□ -0.94
CLK3-222ENST00000568232 TPTE2P1Q5T6R2 138 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 PRAMEF5Q5TYX0 476 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 PLCXD3Q63HM9 321 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 CGB2Q6NT52 195 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 SLC35E3Q7Z769 313 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 DRAM1Q8N682 238 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 CCDC197Q8NCU1 140 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 OR11H1Q8NG94 326 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 OR8B12Q8NGG6 310 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 OR6K6Q8NGW6 343 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 FAM81AQ8TBF8 368 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 DDB2Q92466 427 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 HES4Q9HCC6 221 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 CD300AQ9UGN4 299 aa9.17□□□□□ -0.94
CLK3-222ENST00000568232 FAM32AQ9Y421 112 aaKnown RBP9.17□□□□□ -0.94
CLK3-222ENST00000568232 TMEM82A0PJX8 343 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 OR5B21A6NL26 309 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 CCRL2O00421 344 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 IGHG2P01859 326 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 H2BFMP0C1H6 154 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 FAM106CPP0CH98 169 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 IGHV4-30-4P0DP06 118 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 SPI1P17947 270 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 RHCEP18577 417 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 GDNFP39905 211 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 HNF4GQ14541 408 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 PNLIPRP3Q17RR3 467 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 CXorf66Q5JRM2 361 aaPredicted RBP9.16□□□□□ -0.94
CLK3-222ENST00000568232 UTF1Q5T230 341 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 OR8H2Q8N162 312 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 OR6N2Q8NGY6 317 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 TRMT10AQ8TBZ6 339 aaKnown RBP9.16□□□□□ -0.94
CLK3-222ENST00000568232 ISYNA1Q9NPH2 558 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 CMTM6Q9NX76 183 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 LINC00312Q9Y6C7 94 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 SIRT4Q9Y6E7 314 aaPredicted RBP9.16□□□□□ -0.94
CLK3-222ENST00000568232 DNAH10Q8IVF4 4471 aa9.16□□□□□ -0.94
CLK3-222ENST00000568232 KMT2AQ03164 3969 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A18PA6NE21 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A16PA6NEW6 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A20PA6NIJ5 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A9PA6NNJ1 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A12PA8MX19 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A5PA8MXJ8 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 F8VVB4 439 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 F8VWA3 439 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 LY6LH3BQJ8 138 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 BUB1B-PAK6H3BSN5 160 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 J3QT63 122 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 PSMD9O00233 223 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 EDF1O60869 148 aaKnown RBP9.15□□□□□ -0.94
CLK3-222ENST00000568232 NPPAP01160 153 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A15PP0C7V4 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A13PP0C7W8 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A14PP0C7W9 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 FAM90A24PP0C7X0 464 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 MAP2K3P46734 347 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 SF3A3Q12874 501 aaKnown RBP eCLIP9.15□□□□□ -0.94
CLK3-222ENST00000568232 GPR50Q13585 617 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 CRMP1Q14194 572 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 LINC01590Q5TEZ4 76 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 ASPHD1Q5U4P2 390 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 KRT74Q7RTS7 529 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 ZNF429Q86V71 674 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 ERI1Q8IV48 349 aaKnown RBP9.15□□□□□ -0.94
CLK3-222ENST00000568232 FOXRED2Q8IWF2 684 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 OR52N4Q8NGI2 321 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 OR56B4Q8NH76 319 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 ZNF596Q8TC21 504 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 C7orf34Q96L11 122 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 DHRS1Q96LJ7 313 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 NMNAT2Q9BZQ4 307 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 CHST6Q9GZX3 395 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 ZNF286AQ9HBT8 521 aa9.15□□□□□ -0.94
CLK3-222ENST00000568232 H3BSH0 61 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 GSTA4O15217 222 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 SAP30O75446 220 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 INMTO95050 263 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 NCK1P16333 377 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 CDK2P24941 298 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 MNDAP41218 407 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 GSSP48637 474 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 ERVK11-1P61568 191 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 HES1Q14469 280 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 RBM39Q14498 530 aaKnown RBP9.14□□□□□ -0.95
CLK3-222ENST00000568232 FAM53AQ6NSI3 398 aaPredicted RBP9.14□□□□□ -0.95
CLK3-222ENST00000568232 TRAPPC6BQ86SZ2 158 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 RTN4RL2Q86UN3 420 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 ANGPTL5Q86XS5 388 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.14□□□□□ -0.95
CLK3-222ENST00000568232 OR8D4Q8NGM9 314 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 C4orf3Q8WVX3 66 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 LINC00476Q8WZB0 136 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 FGFR1OP2Q9NVK5 253 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 TAS2R1Q9NYW7 299 aa9.14□□□□□ -0.95
CLK3-222ENST00000568232 RRP15Q9Y3B9 282 aaKnown RBP9.14□□□□□ -0.95
CLK3-222ENST00000568232 LY6G6CO95867 125 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms