RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 FAM157CP0CG43 387 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 HSMCR30P0CW71 290 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 MAPK3P27361 379 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 MAP2K4P45985 399 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 GPR50Q13585 617 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 KISS1Q15726 138 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 TBCEQ15813 527 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 DGUOKQ16854 277 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 C11orf91Q3C1V1 193 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 ASPHD2Q6ICH7 369 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 SATL1Q86VE3 508 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 MS4A15Q8N5U1 240 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 OR5D18Q8NGL1 313 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 EMG1Q92979 244 aaKnown RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 DACT3Q96B18 629 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 SDSLQ96GA7 329 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 NUDT16L1Q9BRJ7 211 aaKnown RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 MRI1Q9BV20 369 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 YTHDF1Q9BYJ9 559 aaKnown RBP11.28□□□□□ -0.6
SHMT2-228ENST00000557302 ISYNA1Q9NPH2 558 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 OR14J1Q9UGF5 321 aa11.28□□□□□ -0.6
SHMT2-228ENST00000557302 TRBV5-7A0A0A0MS05 114 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 KIR2DS1A0A191URI9 304 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 GPR37O15354 613 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 ANGPTL7O43827 346 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 MRPS14O60783 128 aaKnown RBP11.27□□□□□ -0.61
SHMT2-228ENST00000557302 FCN3O75636 299 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 GPX5O75715 221 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 AVPP01185 164 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 ALDOBP05062 364 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 SELLP14151 372 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 FSTP19883 344 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 BCL3P20749 454 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 PRDX2P32119 198 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 LIPKQ5VXJ0 399 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 FIP1L1Q6UN15 594 aaKnown RBP11.27□□□□□ -0.61
SHMT2-228ENST00000557302 BTN2A1Q7KYR7 527 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 ZNF367Q7RTV3 350 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 RNF144BQ7Z419 303 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 SAXO1Q8IYX7 474 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 CD177Q8N6Q3 437 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 ZSCAN4Q8NAM6 433 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-228ENST00000557302 OR52N4Q8NGI2 321 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 ORAI1Q96D31 301 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 DERL3Q96Q80 235 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 GPER1Q99527 375 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 TMED9Q9BVK6 235 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 TMEM138Q9NPI0 162 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 RBFOX1Q9NWB1 397 aaKnown RBP11.27□□□□□ -0.61
SHMT2-228ENST00000557302 SLC25A10Q9UBX3 287 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-228ENST00000557302 OPN4Q9UHM6 478 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 MAB21L2Q9Y586 359 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 AUP1Q9Y679 476 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 SVEP1Q4LDE5 3571 aa11.27□□□□□ -0.61
SHMT2-228ENST00000557302 A0A1W2PPK0 400 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 KDM4BO94953 1096 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 TMEM225BP0DP42 221 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 NDUFB7P17568 137 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 IGFBP3P17936 291 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-228ENST00000557302 BDKRB2P30411 391 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 TGFBR2P37173 567 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 NPBWR2P48146 333 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 CAPZA1P52907 286 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 ZP1P60852 638 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 PAX8Q06710 450 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 MLLT11Q13015 90 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-228ENST00000557302 TPBGQ13641 420 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 DDI2Q5TDH0 399 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 CRIP3Q6Q6R5 217 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 C1orf229Q6ZS94 237 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-228ENST00000557302 C1QL2Q7Z5L3 287 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 FAM58AQ8N1B3 248 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 FGFRL1Q8N441 504 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 SVOPQ8N4V2 548 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 ZNF561Q8N587 486 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 PNLDC1Q8NA58 520 aaKnown RBP11.26□□□□□ -0.61
SHMT2-228ENST00000557302 ZNRF1Q8ND25 227 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 TMEM185AQ8NFB2 350 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 TNFAIP8L1Q8WVP5 186 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 MGLLQ99685 303 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 DOCK11Q5JSL3 2073 aa11.26□□□□□ -0.61
SHMT2-228ENST00000557302 TRAV8-7A0A075B6U6 113 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 IGKV1-12A0A0C4DH73 117 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 GABRPO00591 440 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 IGKV1D-12P01611 117 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 LIPFP07098 398 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 PRKACAP17612 351 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 ADRA2CP18825 462 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 ZNF93P35789 620 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-228ENST00000557302 CEBPDP49716 269 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-228ENST00000557302 CAV3P56539 151 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 ACSM3Q53FZ2 586 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 PXT1Q8NFP0 134 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 NANPQ8TBE9 248 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 H1FXQ92522 213 aaKnown RBP11.25□□□□□ -0.61
SHMT2-228ENST00000557302 FAM192AQ9GZU8 254 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 RHOFQ9HBH0 211 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 HMG20AQ9NP66 347 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 NOX4Q9NPH5 578 aa11.25□□□□□ -0.61
SHMT2-228ENST00000557302 ACOT13Q9NPJ3 140 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms