RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	MUC1	P15941	1255 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	PVALB	P20472	110 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	TMEM33	P57088	247 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	PDZK1IP1	Q13113	114 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	GPR157	Q5UAW9	335 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	TMEM211	Q6ICI0	200 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	LIAT1	Q6ZQX7	453 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	FOXRED2	Q8IWF2	684 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	COMMD1	Q8N668	190 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	ESX1	Q8N693	406 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	CCDC71L	Q8N9Z2	235 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	AKR7L	Q8NHP1	331 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	LYPD6B	Q8NI32	183 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	SPSB4	Q96A44	273 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	TMEM45B	Q96B21	275 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	LIME1	Q9H400	295 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	LSM5	Q9Y4Y9	91 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	IGKV1-12	A0A0C4DH73	117 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	CXCL13	O43927	109 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	GPR137B	O60478	399 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	IGKV1D-12	P01611	117 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	TDGF1	P13385	188 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	RCC1	P18754	421 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	GLP1R	P43220	463 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	MALL	Q13021	153 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	PPP1R32	Q7Z5V6	425 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	LGI3	Q8N145	548 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	TOMM40L	Q969M1	308 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	CPNE4	Q96A23	557 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	MOB3A	Q96BX8	217 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	C18orf12	Q96KH6	178 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	ALKBH3	Q96Q83	286 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	PRO3102	Q9H379	93 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	GPR35	Q9HC97	309 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	KLF2	Q9Y5W3	355 aa	Predicted RBP	11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A10P	A6NDY2	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A18P	A6NE21	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A16P	A6NEW6	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A20P	A6NIJ5	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A8P	A6NJQ4	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	LRRC3C	A6NJW4	275 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A7P	A6NKC0	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A22P	A8MWA6	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A12P	A8MX19	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A5P	A8MXJ8	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A23P	A8MXZ1	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	LINC01387	J3KSC0	135 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	GEMIN2	O14893	280 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	CYTIP	O60759	359 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	OR5AC1	P0C628	307 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A15P	P0C7V4	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A13P	P0C7W8	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A14P	P0C7W9	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM90A24P	P0C7X0	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	TCN2	P20062	427 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	NME2	P22392	152 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	NTF4	P34130	210 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	OPRM1	P35372	400 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	RGS19	P49795	217 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	RRAD	P55042	308 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	IL13RA2	Q14627	380 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	SWI5	Q1ZZU3	235 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	RSPO4	Q2I0M5	234 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	CEACAM16	Q2WEN9	425 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	SLC22A25	Q6T423	547 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FBXL14	Q8N1E6	418 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	OR10D3	Q8NH80	312 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	PRDM14	Q9GZV8	571 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	TMEM231	Q9H6L2	316 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM212B	Q9NTI7	297 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FBXO9	Q9UK97	447 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	ST3GAL6	Q9Y274	331 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	STARD10	Q9Y365	291 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	NCOA6	Q14686	2063 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	BORCS7-ASMT	A0A0B4J1R7	106 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774		A0A0G2JMM0	328 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774		A0A1W2PPB8	328 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774		A0A1W2PRS3	328 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	KIR3DP1	A8MWS1	328 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FARS2	O95363	451 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	MBP	P02686	304 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	SEC11B	P0C7V7	166 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	DUSP1	P28562	367 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	P2RY1	P47900	373 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	DVL1P1	P54792	670 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	RBM11	P57052	281 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	SRPX	P78539	464 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	HMGN3	Q15651	99 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	PLCXD3	Q63HM9	321 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	FAM185A	Q8N0U4	392 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	RSRP1	Q9BUV0	290 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	C1QTNF5	Q9BXJ0	243 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	SLC2A9	Q9NRM0	540 aa		11.69	□□□□□ -0.54
SHMT2-222	ENST00000555774	KIAA1549	Q9HCM3	1950 aa		11.68	□□□□□ -0.54
SHMT2-222	ENST00000555774	PRSS44	E7EML9	344 aa		11.68	□□□□□ -0.54
SHMT2-222	ENST00000555774	SFTA3	P0C7M3	94 aa		11.68	□□□□□ -0.54
SHMT2-222	ENST00000555774	ZNF92	Q03936	586 aa		11.68	□□□□□ -0.54
SHMT2-222	ENST00000555774	SRSF7	Q16629	238 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
SHMT2-222	ENST00000555774	PIGY	Q3MUY2	71 aa		11.68	□□□□□ -0.54
SHMT2-222	ENST00000555774	TMEM88	Q6PEY1	159 aa		11.68	□□□□□ -0.54

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