RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 KIR3DL3Q8N743 410 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 ZDHHC22Q8N966 263 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 OR52N1Q8NH53 320 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 ZFAND2BQ8WV99 257 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 RFT1Q96AA3 541 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 SPACA5Q96QH8 159 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 RBFOX1Q9NWB1 397 aaKnown RBP11.3□□□□□ -0.6
SHMT2-219ENST00000555563 PSORS1C1Q9UIG5 152 aa11.3□□□□□ -0.6
SHMT2-219ENST00000555563 SIRT4Q9Y6E7 314 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-219ENST00000555563 CENPVL3A0A0U1RRI6 287 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 A0A1W2PQ09 198 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 DNAJC9-AS1A6NH13 148 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 SPRY1O43609 319 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-219ENST00000555563 SULT1B1O43704 296 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 MT-ND2P03891 347 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 SOX2P48431 317 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 DLX1P56177 255 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 MED21Q13503 144 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 PDCD1Q15116 288 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 VMO1Q7Z5L0 202 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 CMTM4Q8IZR5 234 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 ZNF485Q8NCK3 441 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 BPIFB6Q8NFQ5 453 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 OR5D18Q8NGL1 313 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 GATAD2BQ8WXI9 593 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 EMG1Q92979 244 aaKnown RBP11.29□□□□□ -0.6
SHMT2-219ENST00000555563 LHX4Q969G2 390 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 SMIM19Q96E16 107 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 DMRTB1Q96MA1 342 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 C1orf147Q96MC9 270 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-219ENST00000555563 SIRT7Q9NRC8 400 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 C19orf12Q9NSK7 152 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 PLCXD1Q9NUJ7 323 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 CHCHD3Q9NX63 227 aaKnown RBP11.29□□□□□ -0.6
SHMT2-219ENST00000555563 BABAM2Q9NXR7 383 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 IL36RNQ9UBH0 155 aa11.29□□□□□ -0.6
SHMT2-219ENST00000555563 TRBV23-1A0A0A0MS06 115 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 IGHV1-69DA0A0B4J2H0 117 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 H0YJX3 145 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 TRIM77I1YAP6 450 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 ANGPTL7O43827 346 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 CYB5AP00167 134 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 IGHV1-69P01742 117 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 HCKP08631 526 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 BCL3P20749 454 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 C21orf33P30042 268 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-219ENST00000555563 NPBWR2P48146 333 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 UBA52P62987 128 aaKnown RBP11.28□□□□□ -0.6
SHMT2-219ENST00000555563 PRB3Q04118 309 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-219ENST00000555563 PDZK1IP1Q13113 114 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 ASPHD2Q6ICH7 369 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 CRIP3Q6Q6R5 217 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 SERPINA12Q8IW75 414 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 PDZD9Q8IXQ8 264 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 MKXQ8IYA7 352 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 Q8IYB0 196 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 FAM185AQ8N0U4 392 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 STX19Q8N4C7 294 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 Q8N7P7 452 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 ZFP41Q8N8Y5 198 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 OR51A2Q8NGJ7 313 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 OR5D14Q8NGL3 314 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 OR13C5Q8NGS8 318 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 GPR148Q8TDV2 347 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 DUX5Q96PT3 197 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 NEK6Q9HC98 313 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 FKBP14Q9NWM8 211 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 TAS2R4Q9NYW5 299 aa11.28□□□□□ -0.6
SHMT2-219ENST00000555563 IGKV1-12A0A0C4DH73 117 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 H0YHG0 523 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 OGG1O15527 345 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 ZNF737O75373 536 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 IGKV1D-12P01611 117 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 TK1P04183 234 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 CALCBP10092 127 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 BPIFB3P59826 476 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 COL10A1Q03692 680 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 DOC2BQ14184 412 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 DEFB112Q30KQ8 113 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 DMKNQ6E0U4 476 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-219ENST00000555563 ZNF529Q6P280 563 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 FAM58AQ8N1B3 248 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 ASCC1Q8N9N2 400 aaKnown RBP11.27□□□□□ -0.61
SHMT2-219ENST00000555563 OR4M1Q8NGD0 313 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 FAM216AQ8WUB2 273 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 TMEM106AQ96A25 262 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 FAM234AQ9H0X4 552 aa11.27□□□□□ -0.61
SHMT2-219ENST00000555563 PNMA8CA0A1B0GUJ8 204 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 K7N7A8 449 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 M0R1W7 72 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 MYL12BO14950 172 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 KDM4BO94953 1096 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 ALX3O95076 343 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 HAND1O96004 215 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 CD2P06729 351 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 PRKACAP17612 351 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 RAB3AP20336 220 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 DUSP1P28562 367 aa11.26□□□□□ -0.61
SHMT2-219ENST00000555563 SNU13P55769 128 aaKnown RBP11.26□□□□□ -0.61
SHMT2-219ENST00000555563 WNT4P56705 351 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms