RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 SPACA1Q9HBV2 294 aa11.95□□□□□ -0.5
VPS33A-208ENST00000543633 PTRH2Q9Y3E5 179 aaKnown RBP11.95□□□□□ -0.5
VPS33A-208ENST00000543633 CHCHD2Q9Y6H1 151 aaPredicted RBP11.95□□□□□ -0.5
VPS33A-208ENST00000543633 NCOA6Q14686 2063 aaPredicted RBP11.95□□□□□ -0.5
VPS33A-208ENST00000543633 KIAA1549Q9HCM3 1950 aa11.95□□□□□ -0.5
VPS33A-208ENST00000543633 NSG1A0A0A6YYJ2 146 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 ZNF850A8MQ14 1090 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 NPIPA2E9PIF3 369 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 NPIPA3F8WFD2 350 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 K7N7A8 449 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 DNPH1O43598 174 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 SCRG1O75711 98 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 CDS2O95674 445 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 IGHV2-5P01817 119 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 OPN1LWP04000 364 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 CD63P08962 238 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 RAB5AP20339 215 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 ZNF616Q08AN1 781 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 FAM27BQ5VT28 67 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 SLC25A45Q8N413 288 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 LRRC18Q8N456 261 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 TMEM156Q8N614 296 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 MSI2Q96DH6 328 aaKnown RBP11.94□□□□□ -0.5
VPS33A-208ENST00000543633 HDHD3Q9BSH5 251 aaPredicted RBP11.94□□□□□ -0.5
VPS33A-208ENST00000543633 BCO1Q9HAY6 547 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 WFDC1Q9HC57 220 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 SLC2A9Q9NRM0 540 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 RYDENQ9NUL5 291 aaKnown RBP11.94□□□□□ -0.5
VPS33A-208ENST00000543633 RARRES3Q9UL19 164 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 KNL1Q8NG31 2342 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 BTBD17A6NE02 478 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 UMAD1C9J7I0 102 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 NME2P1O60361 137 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 PHYHD1Q5SRE7 291 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 TMEM42Q69YG0 159 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 FBXW12Q6X9E4 464 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 DNASE2BQ8WZ79 361 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 MARS2Q96GW9 593 aaKnown RBP11.94□□□□□ -0.5
VPS33A-208ENST00000543633 TECTBQ96PL2 329 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 LIME1Q9H400 295 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 UNKLQ9H9P5 680 aaKnown RBP11.94□□□□□ -0.5
VPS33A-208ENST00000543633 GPR173Q9NS66 373 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 PLEK2Q9NYT0 353 aa11.94□□□□□ -0.5
VPS33A-208ENST00000543633 SGCEO43556 437 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 SNRNP70P08621 437 aaKnown RBP11.93□□□□□ -0.5
VPS33A-208ENST00000543633 ZNF14P17017 642 aaPredicted RBP11.93□□□□□ -0.5
VPS33A-208ENST00000543633 KLK2P20151 261 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 ACKR3P25106 362 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 RBP2P50120 134 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 AFF3P51826 1226 aaKnown RBP11.93□□□□□ -0.5
VPS33A-208ENST00000543633 ZNF266Q14584 549 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 CLINT1Q14677 625 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 LCN10Q6JVE6 187 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 DTX1Q86Y01 620 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 C20orf196Q8IYI0 205 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 GPR137CQ8N3F9 429 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 OR4D5Q8NGN0 318 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 TOMM40LQ969M1 308 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 SGK3Q96BR1 496 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 FAAP24Q9BTP7 215 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 RSRP1Q9BUV0 290 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 SF3B5Q9BWJ5 86 aaKnown RBP11.93□□□□□ -0.5
VPS33A-208ENST00000543633 ULBP2Q9BZM5 246 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 EIF5A2Q9GZV4 153 aaKnown RBP11.93□□□□□ -0.5
VPS33A-208ENST00000543633 KCNJ16Q9NPI9 418 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 A0A0C4DFX4 3053 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 M0R036 132 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 CST2P09228 141 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 SULT1A1P50225 295 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 KRTAP27-1Q3LI81 207 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 ETV3LQ6ZN32 361 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 LYZL2Q7Z4W2 148 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 OR6C1Q96RD1 312 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 SPIN2AQ99865 258 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 SPIN2BQ9BPZ2 258 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 C11orf1Q9H5F2 150 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 NXT1Q9UKK6 140 aaKnown RBP11.93□□□□□ -0.5
VPS33A-208ENST00000543633 ZDHHC8Q9ULC8 765 aa11.93□□□□□ -0.5
VPS33A-208ENST00000543633 UNC13CQ8NB66 2214 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 LOC102723996A0A087X1L8 192 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 DUXBA0A1W2PPF3 345 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 A0A1W2PPH5 198 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 K7ESF4 209 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 SYNGR3O43761 229 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 PITX3O75364 302 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 TIAF1O95411 115 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 ZNF806P0C7X5 589 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 DSCR4P56555 118 aaPredicted RBP11.92□□□□□ -0.5
VPS33A-208ENST00000543633 HERV-K104P61576 105 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 GNMTQ14749 295 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 SNAI3Q3KNW1 292 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 TMEM211Q6ICI0 200 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 Q6ZS49 121 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 BORCS8Q96FH0 119 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 REEP6Q96HR9 211 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 BOD1Q96IK1 185 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 ZNF385AQ96PM9 386 aaKnown RBP11.92□□□□□ -0.5
VPS33A-208ENST00000543633 WDR54Q9H977 334 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 TCFL5Q9UL49 500 aa11.92□□□□□ -0.5
VPS33A-208ENST00000543633 RCL1Q9Y2P8 373 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms