RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	LSM2	Q9Y333	95 aa	Known RBP	10.06	□□□□□ -0.8
CAPN1-223	ENST00000533079	WI2-2373I1.2	A0A1W2PRP0	233 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	PRR23D1	E9PI22	279 aa	Predicted RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	C3orf84	H3BNL1	204 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	IGHA1	P01876	353 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	HLA-DQA2	P01906	255 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	NHLRC4	P0CG21	123 aa	Predicted RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	PRR23D2	P0DMB1	279 aa	Predicted RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	NDUFB7	P17568	137 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	AMY2B	P19961	511 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	CFL1	P23528	166 aa	Known RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	HABP2	Q14520	560 aa	Predicted RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	CTF1	Q16619	201 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	DGUOK	Q16854	277 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	TIGD6	Q17RP2	521 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	SLC35D3	Q5M8T2	416 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	LINC00299	Q6ZSB3	139 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	SLC16A12	Q6ZSM3	486 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	BCDIN3D	Q7Z5W3	292 aa	Known RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	FOXRED1	Q96CU9	486 aa	Predicted RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	ERMAP	Q96PL5	475 aa	Predicted RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	NMNAT3	Q96T66	252 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	TEAD3	Q99594	435 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	SRA1	Q9HD15	236 aa	Known RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	ABCB9	Q9NP78	766 aa		10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	RPRD1B	Q9NQG5	326 aa	Known RBP	10.05	□□□□□ -0.8
CAPN1-223	ENST00000533079	hCG_1809904	A0A1W2PP81	198 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079		A0A1W2PPE2	198 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079		A0A1W2PR64	198 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079		A0A1W2PRV1	198 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	TMEM210	A6NLX4	147 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ANXA2P2	A6NMY6	339 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	CDIPT	O14735	213 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	SLC22A1	O15245	554 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ACAA1	P09110	424 aa	Predicted RBP	10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	SELL	P14151	372 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF823	P16415	610 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	MYL12A	P19105	171 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	SLC2A5	P22732	501 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	PSMB9	P28065	219 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	NOS3	P29474	1203 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	GNAL	P38405	381 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	VDAC2	P45880	294 aa	Predicted RBP	10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	SLC25A1	P53007	311 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	LGALS4	P56470	323 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	KRTAP10-11	P60412	298 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	CD83	Q01151	205 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	MLLT11	Q13015	90 aa	Predicted RBP	10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	SPHAR	Q15513	63 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ARSJ	Q5FYB0	599 aa	Predicted RBP	10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	PLBD1	Q6P4A8	553 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	SLC37A3	Q8NCC5	494 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ANGPTL6	Q8NI99	470 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	RPS4Y2	Q8TD47	263 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	MYCBP	Q99417	103 aa	Predicted RBP	10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	MGLL	Q99685	303 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	KCNJ15	Q99712	375 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	RTL8A	Q9BWD3	113 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	NMNAT2	Q9BZQ4	307 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	SP140L	Q9H930	580 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZMAT5	Q9UDW3	170 aa	Known RBP	10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF391	Q9UJN7	358 aa		10.04	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF878	C9JN71	531 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	F2RL2	O00254	374 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	HIST1H1C	P16403	213 aa	Known RBP	10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	CD36	P16671	472 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	FAM3A	P98173	230 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	GPR50	Q13585	617 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	TIMM50	Q3ZCQ8	353 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF485	Q8NCK3	441 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	CSNK2A3	Q8NEV1	391 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR5T2	Q8NGG2	359 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	OR52N1	Q8NH53	320 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	SEH1L	Q96EE3	360 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	MICU1	Q9BPX6	476 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	ZNF649	Q9BS31	505 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	ABCB10	Q9NRK6	738 aa		10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	MRPL22	Q9NWU5	206 aa	Known RBP	10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	TBL2	Q9Y4P3	447 aa	Known RBP	10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	TSSC4	Q9Y5U2	329 aa	Predicted RBP	10.03	□□□□□ -0.8
CAPN1-223	ENST00000533079	hCG_38984	A0A1B0GV85	526 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079		A6NDX4	124 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	CCDC182	A6NF36	153 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	FAM90A8P	A6NJQ4	464 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	OR2AT4	A6NND4	320 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	CCRL2	O00421	344 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	LIMS3	P0CW19	117 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	LIMS4	P0CW20	117 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	ANOS1	P23352	680 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	DYNLT3	P51808	116 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	WNT4	P56705	351 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	BDH1	Q02338	343 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	TPBG	Q13641	420 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	CRMP1	Q14194	572 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	SLC35F1	Q5T1Q4	408 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	SLC16A9	Q7RTY1	509 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	MKX	Q8IYA7	352 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	FAM185A	Q8N0U4	392 aa		10.02	□□□□□ -0.81
CAPN1-223	ENST00000533079	ACBD7	Q8N6N7	88 aa		10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms