RNA–Protein interactions for RNA: ENST00000517239.1

RNU4-60P-201, Transcript of RNA, U4 small nuclear 60, pseudogene, humanhuman

BASIC

Gene RNU4-60P, Length 135 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-60P-201ENST00000517239 CXCR1P25024 350 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 CD70P32970 193 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 CDKN2BP42772 138 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 PRR3P79522 188 aaKnown RBP3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 ARFRP1Q13795 201 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 ZNF718Q3SXZ3 478 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 RSBN1Q5VWQ0 802 aaPredicted RBP3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 TMEM236Q5W0B7 351 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 KDM4DQ6B0I6 523 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 FAM71E1Q6IPT2 247 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 DNAJC24Q6P3W2 148 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 PLET1Q6UQ28 207 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 DGAT2L6Q6ZPD8 337 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 ZNF493Q6ZR52 646 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 NAA40Q86UY6 237 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 ZCCHC24Q8N2G6 241 aaKnown RBP3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 ARIH2OSQ8N7S6 290 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 NKAPP1Q8N9T2 125 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 Q8NBF4 154 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 COQ8AQ8NI60 647 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 KCTD4Q8WVF5 259 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 MAFIPQ8WZ33 124 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 TAMM41Q96BW9 452 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 DCPSQ96C86 337 aaKnown RBP3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 FMC1Q96HJ9 113 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 SPACA5Q96QH8 159 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 ARHGDIGQ99819 225 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 EBF4Q9BQW3 602 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 KIFC1Q9BW19 673 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 SLC29A3Q9BZD2 475 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 SLC25A31Q9H0C2 315 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 SLCO1B3Q9NPD5 702 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 HEBP1Q9NRV9 189 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 RBFOX1Q9NWB1 397 aaKnown RBP3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 DOK5Q9P104 306 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 PCYOX1Q9UHG3 505 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 POLR1DQ9Y2S0 133 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 VIRMAQ69YN4 1812 aaKnown RBP3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 SMARCA2P51531 1590 aa3.04□□□□□ -1.92
RNU4-60P-201ENST00000517239 SETD1AO15047 1707 aaKnown RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 A0A0G2JMP0 313 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 FAM172BPA6NC97 362 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 OR6C6A6NF89 314 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 FAM183AA6NL82 134 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 ZNF729A6NN14 1252 aaPredicted RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 TSTD3H0UI37 97 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 H3BP45 60 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 K7EQS6 105 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 SLC31A2O15432 143 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 LYPLA1O75608 230 aaPredicted RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 TRBV12-3P01733 135 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 LINC00614P0C842 121 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 PATE4P0C8F1 98 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 CXCL2P19875 107 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 ELK4P28324 431 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 CCL23P55773 120 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 GINS1Q14691 196 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 PMVKQ15126 192 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 ZNF684Q5T5D7 378 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 PCSK4Q6UW60 755 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 DPPA2Q7Z7J5 298 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 MUC15Q8N387 334 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 C12orf29Q8N999 325 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 TMEM35BQ8NCS4 154 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 OR4M2Q8NGB6 313 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 ITLN1Q8WWA0 313 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 SRSF12Q8WXF0 261 aaKnown RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 TMEM190Q8WZ59 177 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 BORCS5Q969J3 196 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 TMBIM1Q969X1 311 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 RPUSD4Q96CM3 377 aaKnown RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 ZHX1-C8orf76Q96EF9 292 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 GALNT14Q96FL9 552 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 SLC45A3Q96JT2 553 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 SIGLEC12Q96PQ1 595 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 ZNF184Q99676 751 aaPredicted RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 SLC25A39Q9BZJ4 359 aaPredicted RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 TRIM4Q9C037 500 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 CHST5Q9GZS9 411 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 DEFB127Q9H1M4 99 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 POMKQ9H5K3 350 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 PTGES2Q9H7Z7 377 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 NMNAT1Q9HAN9 279 aaPredicted RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 PARVAQ9NVD7 372 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 OPTCQ9UBM4 332 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 SIGLEC7Q9Y286 467 aa3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 RAI1Q7Z5J4 1906 aaPredicted RBP3.03□□□□□ -1.92
RNU4-60P-201ENST00000517239 KMT2EQ8IZD2 1858 aa3.03□□□□□ -1.93
RNU4-60P-201ENST00000517239 NUP160Q12769 1436 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 IGHV1-69DA0A0B4J2H0 117 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 A0A1B0GXF2 115 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 VPS37CA5D8V6 355 aaPredicted RBP3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 BTNL10A8MVZ5 291 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 C8orf87E5RJ46 101 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 C15orf65H3BRN8 121 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 LMX1BO60663 402 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 ARL6IP5O75915 188 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 ATG12O94817 140 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 S1PR2O95136 353 aa3.02□□□□□ -1.93
RNU4-60P-201ENST00000517239 IFNA1P01562 189 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms