RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 BTG1P62324 171 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 UBE2BP63146 152 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 SLC25A11Q02978 314 aaKnown RBP5.25□□□□□ -1.57
USF3-204ENST00000496826 SPANXN5Q5MJ07 72 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 Q6ZSR6 202 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 OR11H4Q8NGC9 324 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 MAGT1Q9H0U3 335 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 A0A1W2PP11 408 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 YPEL1O60688 119 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 ATP6V0CP27449 155 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 SELENOTP62341 195 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 BHLHA9Q7RTU4 235 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 IRF2BP1Q8IU81 584 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 SPACA9Q96E40 222 aaPredicted RBP5.25□□□□□ -1.57
USF3-204ENST00000496826 TMEM19Q96HH6 336 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 TEX101Q9BY14 249 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 TMEM126AQ9H061 195 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 COQ10BQ9H8M1 238 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 NTN4Q9HB63 628 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 CISD1Q9NZ45 108 aaKnown RBP5.25□□□□□ -1.57
USF3-204ENST00000496826 HSFX1Q9UBD0 423 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 CUL7Q14999 1698 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 SIRPB1O00241 398 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 CEACAM6P40199 344 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 DLX6P56179 175 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 RING1Q06587 406 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 CLEC2AQ6UVW9 174 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 FAM71AQ8IYT1 594 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 IGFBPL1Q8WX77 278 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 ARPC1AQ92747 370 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 FCRL5Q96RD9 977 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 COA4Q9NYJ1 87 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 TRBV23OR9-2A0A075B6M9 112 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 KIR2DL5BA0A0G2JN68 375 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 KIR2DL5BA0A0G2JPC4 375 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 MPTX1A8MV57 137 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 H7C2G1 150 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 TMEM95Q3KNT9 176 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 KLHDC10Q6PID8 442 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 FAM72BQ86X60 149 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 KIR2DL5AQ8N109 375 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 ZNF385AQ96PM9 386 aaKnown RBP5.25□□□□□ -1.57
USF3-204ENST00000496826 SYNPO2LQ9H987 977 aa5.25□□□□□ -1.57
USF3-204ENST00000496826 A0A1B0GTI1 187 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 C9orf172C9J069 976 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 CRYBB3P26998 211 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 SRD5A2P31213 254 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 IRF3Q14653 427 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 CNIH2Q6PI25 160 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 OR52N5Q8NH56 324 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 KISS1RQ969F8 398 aaPredicted RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 NCOR1P1Q9H4R4 102 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 PGAP2Q9UHJ9 254 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 PPIL1Q9Y3C6 166 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 APCSP02743 223 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 ZNF658BQ4V348 819 aaPredicted RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 ZNF761Q86XN6 746 aaPredicted RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 MDGA1Q8NFP4 955 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 MISP3Q96FF7 219 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 SLIRPQ9GZT3 109 aaKnown RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 GPATCH2LQ9NWQ4 482 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 TAS2R5Q9NYW4 299 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 PRNDQ9UKY0 176 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 PXMP4Q9Y6I8 212 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 ZNF518AQ6AHZ1 1483 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 MYH8P13535 1937 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 A0A087WV62 115 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 A0A1B0GU03 582 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 ASPDHA6ND91 283 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 ZNF185O15231 689 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 CTSDP07339 412 aaPredicted RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 RPL12P30050 165 aaKnown RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 GPR183P32249 361 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 APOBEC1P41238 236 aaKnown RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 CKS1BP61024 79 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 LTC4SQ16873 150 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 C1orf127Q8N9H9 656 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 CLDN23Q96B33 292 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 ACY3Q96HD9 319 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 IL23AQ9NPF7 189 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 MBNL1Q9NR56 388 aaKnown RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 CABIN1Q9Y6J0 2220 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 SETD1AO15047 1707 aaKnown RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 CFAP43Q8NDM7 1665 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 CFTRP13569 1480 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 LILRA5A6NI73 299 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 H3BNC9 293 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 NDUFB1O75438 58 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 CTAG1AP78358 180 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 SLC38A11Q08AI6 406 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 PMS2P11Q13670 270 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 XKR7Q5GH72 579 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 APOOLQ6UXV4 268 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 SPNS2Q8IVW8 549 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 TDHQ8IZJ6 230 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 RABAC1Q9UI14 185 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 TBX21Q9UL17 535 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 MAP1BP46821 2468 aaKnown RBP5.24□□□□□ -1.57
USF3-204ENST00000496826 TCRBV9S1A1TA0A576 114 aa5.24□□□□□ -1.57
USF3-204ENST00000496826 ZNF195O14628 629 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms